myRT

myRT report for GCA_002241545.2_ASM224154v2

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Seq: NLBW02000018.1 Salmonella enterica subsp. enterica serovar Newport strain CFSAN051029 CFSAN051029_18, whole genome shotgun sequence (81365 bp)
Overview 1 RT 1: 31372-35052 bp Neighborhood of RT #1 [31372, 35052] Arm-DNA-bind_3 INT_P4_C RVT-Retrons Feature: gene Location: 31372-31701 bp Feature: domain Description: Arm-DNA-bind_3 Location: 31381-31636 bp Feature: domain Description: Arm-DNA-bind_3 Location: 31 381 -31 636 bp Feature: gene Location: 31710-32216 bp Ori: PUU30578.1 Feature: domain Description: INT_P4_C Location: 31713-32148 bp Feature: domain Description: INT_P4_C Location: 31 71 3-321 48 bp Feature: gene Location: 32298-33230 bp Ori: PUU30621.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32454-32997 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32454-32997 bp Feature: gene Location: 33556-34425 bp Feature: gene Location: 34843-35052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), RVT-Retrons

Seq: NLBW02000004.1 Salmonella enterica subsp. enterica serovar Newport strain CFSAN051029 CFSAN051029_4, whole genome shotgun sequence (401170 bp)
Overview 1 RT 1: 82674-89127 bp Neighborhood of RT #1 [82674, 89556] PRK09678 RVT-UG3 RVT-UG8 Tra5 reactive_PduG Feature: gene Location: 82674-83435 bp Feature: gene Location: 83435-83707 bp Ori: PUU39330.1 Feature: domain Description: PRK09678 Location: 83444-83600 bp Feature: domain Description: PRK09678 Location: 83444-83600 bp Feature: gene Location: 84095-85372 bp Ori: PUU39331.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 84383-84878 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 84383-84878 bp Feature: gene Location: 85363-87381 bp Ori: PUU39332.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 85936-86389 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 85936-86389 bp Feature: gene Location: 88061-88840 bp Feature: domain Description: Tra5 Location: 88133-88835 bp Feature: domain Description: Tra5 Location: 88133-88835 bp Feature: gene Location: 88842-89556 bp Feature: domain Description: reactive_PduG Location: 88845-89127 bp Feature: domain Description: reactive_PduG Location: 88845-8912 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG3, RVT-UG8, Tra5 (COG2801), reactive_PduG (TIGR04491)