myRT

myRT report for GCA_002242855.1_ASM224285v1

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Seq: LFDH01000008.1 Pseudomonas aeruginosa strain BK6 contig_8, whole genome shotgun sequence (371976 bp)
Overview 1 RT 1: 71584-81883 bp Neighborhood of RT #1 [71584, 81894] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 71584-73437 bp Feature: domain Description: PRK05658 Location: 71596-73435 bp Feature: domain Description: PRK05658 Location: 71 596-73435 bp Feature: gene Location: 73544-77281 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73652-74309 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73652-74309 bp Feature: domain Description: PRK09776 Location: 74522-74993 bp Feature: domain Description: PRK09776 Location: 74522-74993 bp Feature: domain Description: PAS Location: 75038-75575 bp Feature: domain Description: PAS Location: 75038-75575 bp Feature: domain Description: PRK10060 Location: 75584-77231 bp Feature: domain Description: PRK1 0060 Location: 75584-77231 bp Feature: gene Location: 78362-80047 bp Feature: RT Description: RVT_N Location: 78419-78659 bp Feature: RT Description: RVT_N Location: 7841 9-78659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78707-79343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78707-79343 bp Feature: domain Description: GIIM Note: maturase Location: 79397-79628 bp Feature: domain Description: GIIM Note: maturase Location: 79397-79628 bp Feature: domain Description: HNH Note: nucleases Location: 79880-80018 bp Feature: domain Description: HNH Note: nucleases Location: 79880-8001 8 bp Feature: gene Location: 80374-80511 bp Feature: gene Location: 80773-81894 bp Feature: domain Description: COG3177 Location: 80791-81883 bp Feature: domain Description: COG31 77 Location: 80791 -81 883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )

Seq: LFDH01000032.1 Pseudomonas aeruginosa strain BK6 contig_33, whole genome shotgun sequence (20776 bp)
Overview 1 RT 1: 6125-13900 bp Neighborhood of RT #1 [6125, 13923] RVT-GII GIIM EAL Feature: gene Location: 6125-6415 bp Feature: gene Location: 6427-6939 bp Feature: gene Location: 8615-9883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8828-9485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 882 8-9485 bp Feature: domain Description: GIIM Note: maturase Location: 9563-9785 bp Feature: domain Description: GIIM Note: maturase Location: 9563-9785 bp Feature: gene Location: 10868-11524 bp Feature: gene Location: 13264-13923 bp Feature: domain Description: EAL Location: 13288-13900 bp Feature: domain Description: EAL Location: 132 88-13900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LFDH01000122.1 Pseudomonas aeruginosa strain BK6 contig_132, whole genome shotgun sequence (2414 bp)
Overview 1 RT 1: 624-2280 bp Neighborhood of RT #1 [624, 2327] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 624-2327 bp Feature: RT Description: RVT_N Location: 681-924 bp Feature: RT Description: RVT_N Location: 681-924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 969-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 969-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1659-1890 bp Feature: domain Description: GIIM Note: maturase Location: 1659-1890 bp Feature: domain Description: HNHc Note: nucleases Location: 2124-2280 bp Feature: domain Description: HNHc Note: nucleases Location: 2124-2280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)