myRT

myRT report for GCA_002243385.1_ASM224338v1

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Seq: CP016199.1 Mogibacterium pumilum strain ATCC 700696 genome (1862768 bp)
Overview 1 RT 1: 129702-136671 bp 2 RT 2: 298017-304703 bp 3 RT 3: 605268-614737 bp 4 RT 4: 618042-624527 bp 5 RT 5: 675115-681783 bp 6 RT 6: 851173-857878 bp 7 RT 7: 922543-934008 bp 8 RT 8: 1052379-1058017 bp 9 RT 9: 1166455-1173798 bp 10 RT 10: 1507430-1515950 bp 11 RT 11: 1761511-1773120 bp Neighborhood of RT #1 [129702, 136671] T7_EssCb_Firm T7_EssCb_Firm RVT-GII GIIM LRR_4 LRR_4 Neighborhood of RT #2 [298017, 304732] HipB RVT-GII GIIM ddl YqhQ PRK09328 Neighborhood of RT #3 [605268, 614865] DUF4180 DDE_Tnp_ISL3 RVT-GII GIIM SR_ResInv SpaA Flg_new CollagenBindB CollagenBindB CollagenBindB CollagenBindB CollagenBindB CollagenBindB Neighborhood of RT #4 [618042, 624532] DDE_Tnp_ISL3 COG3464 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #5 [675115, 681803] YejR CobW-like TIGR03943 RVT-GII GIIM OmpR Neighborhood of RT #6 [851173, 857967] NptA PRK05322 RVT-GII GIIM DUF975 Neighborhood of RT #7 [922543, 934008] PRK09604 Uup RVT-GII GIIM acpP Fer4 Fer4 Asp23 Asp23 RVT-GII GIIM Neighborhood of RT #8 [1052379, 1058019] adh_short_C2 fabG Acyl-ACP_TE RVT-GII GIIM MraZ RmsH Neighborhood of RT #9 [1166455, 1173803] Phage_holin_3_3 RVT-GII GIIM YdiL YcaP Neighborhood of RT #10 [1507430, 1515958] MdlB YitT RVT-GII GIIM N6_N4_Mtase LTA_DltD Neighborhood of RT #11 [1761511, 1773209] PHA02517 HTH_21 RVT-GII GIIM HTH_28 HTH_28 2a69 PRK13529 RVT-GII GIIM DUF4317 DUF5104 Feature: gene Location: 129702-131291 bp Feature: domain Description: T7_EssCb_Firm Location: 129705-129765 bp Feature: domain Description: T7_EssCb_Firm Location: 1 29705-1 29765 bp Feature: domain Description: T7_EssCb_Firm Location: 129792-131277 bp Feature: domain Description: T7_EssCb_Firm Location: 1 29792-1 31 277 bp Feature: gene Location: 131464-131655 bp Feature: gene Location: 131785-133077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131986-132604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 986-1 32604 bp Feature: domain Description: GIIM Note: maturase Location: 132658-132868 bp Feature: domain Description: GIIM Note: maturase Location: 1 32658-1 32868 bp Feature: gene Location: 134289-134972 bp Feature: domain Description: LRR_4 Location: 134598-134652 bp Feature: domain Description: LRR_4 Location: 1 34598-1 34652 bp Feature: domain Description: LRR_4 Location: 134697-134835 bp Feature: domain Description: LRR_4 Location: 1 34697-1 34835 bp Feature: gene Location: 135016-136671 bp Feature: gene Location: 298017-298631 bp Feature: domain Description: HipB Location: 298026-298242 bp Feature: domain Description: HipB Location: 298026-298242 bp Feature: gene Location: 298935-299126 bp Feature: gene Location: 299249-300541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299450-300068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299450-300068 bp Feature: domain Description: GIIM Note: maturase Location: 300122-300332 bp Feature: domain Description: GIIM Note: maturase Location: 3001 22-300332 bp Feature: gene Location: 301638-302723 bp Feature: domain Description: ddl Location: 301644-302697 bp Feature: domain Description: ddl Location: 301 644-302697 bp Feature: gene Location: 302789-304732 bp Feature: domain Description: YqhQ Location: 302819-303725 bp Feature: domain Description: YqhQ Location: 30281 9-303725 bp Feature: domain Description: PRK09328 Location: 303857-304703 bp Feature: domain Description: PRK09328 Location: 303857-304703 bp Feature: gene Location: 605268-605624 bp Feature: domain Description: DUF4180 Location: 605286-605613 bp Feature: domain Description: DUF41 80 Location: 605286-60561 3 bp Feature: gene Location: 605889-606209 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 605916-606171 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 60591 6-6061 71 bp Feature: gene Location: 607076-608368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 607277-607895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 607277-607895 bp Feature: domain Description: GIIM Note: maturase Location: 607949-608159 bp Feature: domain Description: GIIM Note: maturase Location: 607949-6081 59 bp Feature: gene Location: 609945-610541 bp Feature: domain Description: SR_ResInv Location: 609954-610359 bp Feature: domain Description: SR_ResInv Location: 609954-61 0359 bp Feature: gene Location: 610903-614865 bp Feature: domain Description: SpaA Location: 612460-612706 bp Feature: domain Description: SpaA Location: 61 2460-61 2706 bp Feature: domain Description: Flg_new Location: 612799-613030 bp Feature: domain Description: Flg_new Location: 61 2799-61 3030 bp Feature: domain Description: CollagenBindB Location: 613057-613321 bp Feature: domain Description: CollagenBindB Location: 61 3057-61 3321 bp Feature: domain Description: CollagenBindB Location: 613336-613609 bp Feature: domain Description: CollagenBindB Location: 61 3336-61 3609 bp Feature: domain Description: CollagenBindB Location: 613624-613879 bp Feature: domain Description: CollagenBindB Location: 61 3624-61 3879 bp Feature: domain Description: CollagenBindB Location: 613900-614170 bp Feature: domain Description: CollagenBindB Location: 61 3900-61 41 70 bp Feature: domain Description: CollagenBindB Location: 614185-614446 bp Feature: domain Description: CollagenBindB Location: 61 41 85-61 4446 bp Feature: domain Description: CollagenBindB Location: 614461-614737 bp Feature: domain Description: CollagenBindB Location: 61 4461 -61 4737 bp Feature: gene Location: 618042-618818 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 618048-618762 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 61 8048-61 8762 bp Feature: gene Location: 618843-619421 bp Feature: domain Description: COG3464 Location: 618846-619413 bp Feature: domain Description: COG3464 Location: 61 8846-61 941 3 bp Feature: gene Location: 620721-622013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 620922-621540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 620922-621 540 bp Feature: domain Description: GIIM Note: maturase Location: 621594-621804 bp Feature: domain Description: GIIM Note: maturase Location: 621 594-621 804 bp Feature: gene Location: 623736-624182 bp Feature: domain Description: PHA02517 Location: 623751-624150 bp Feature: domain Description: PHA0251 7 Location: 623751 -6241 50 bp Feature: gene Location: 624242-624532 bp Feature: domain Description: InsE Location: 624248-624527 bp Feature: domain Description: InsE Location: 624248-624527 bp Feature: gene Location: 675115-676230 bp Feature: domain Description: YejR Location: 675124-676213 bp Feature: domain Description: YejR Location: 6751 24-67621 3 bp Feature: gene Location: 676227-677165 bp Feature: domain Description: CobW-like Location: 676242-676734 bp Feature: domain Description: CobW-like Location: 676242-676734 bp Feature: domain Description: TIGR03943 Location: 676788-677136 bp Feature: domain Description: TIGR03943 Location: 676788-6771 36 bp Feature: gene Location: 678287-679579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 678488-679106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 678488-6791 06 bp Feature: domain Description: GIIM Note: maturase Location: 679160-679370 bp Feature: domain Description: GIIM Note: maturase Location: 6791 60-679370 bp Feature: gene Location: 679949-680542 bp Feature: gene Location: 681123-681803 bp Feature: domain Description: OmpR Location: 681132-681783 bp Feature: domain Description: OmpR Location: 681 1 32-681 783 bp Feature: gene Location: 851173-853038 bp Feature: domain Description: NptA Location: 851188-852814 bp Feature: domain Description: NptA Location: 851 1 88-85281 4 bp Feature: gene Location: 853049-854350 bp Feature: domain Description: PRK05322 Location: 853175-854300 bp Feature: domain Description: PRK05322 Location: 8531 75-854300 bp Feature: gene Location: 855484-856776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 855685-856303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 855685-856303 bp Feature: domain Description: GIIM Note: maturase Location: 856357-856567 bp Feature: domain Description: GIIM Note: maturase Location: 856357-856567 bp Feature: gene Location: 857146-857337 bp Feature: gene Location: 857422-857967 bp Feature: domain Description: DUF975 Location: 857431-857878 bp Feature: domain Description: DUF975 Location: 857431 -857878 bp Feature: gene Location: 922543-923559 bp Feature: domain Description: PRK09604 Location: 922564-923545 bp Feature: domain Description: PRK09604 Location: 922564-923545 bp Feature: gene Location: 923562-924559 bp Feature: domain Description: Uup Location: 923571-924552 bp Feature: domain Description: Uup Location: 923571 -924552 bp Feature: gene Location: 925439-926731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 925640-926258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 925640-926258 bp Feature: domain Description: GIIM Note: maturase Location: 926312-926522 bp Feature: domain Description: GIIM Note: maturase Location: 92631 2-926522 bp Feature: gene Location: 926851-927772 bp Feature: gene Location: 927977-928204 bp Feature: domain Description: acpP Location: 927983-928202 bp Feature: domain Description: acpP Location: 927983-928202 bp Feature: gene Location: 929046-929213 bp Feature: domain Description: Fer4 Location: 929055-929121 bp Feature: domain Description: Fer4 Location: 929055-9291 21 bp Feature: domain Description: Fer4 Location: 929136-929199 bp Feature: domain Description: Fer4 Location: 9291 36-9291 99 bp Feature: gene Location: 929326-930180 bp Feature: domain Description: Asp23 Location: 929875-929935 bp Feature: domain Description: Asp23 Location: 929875-929935 bp Feature: domain Description: Asp23 Location: 929977-930130 bp Feature: domain Description: Asp23 Location: 929977-9301 30 bp Feature: gene Location: 931307-932599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931508-932126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931 508-9321 26 bp Feature: domain Description: GIIM Note: maturase Location: 932180-932390 bp Feature: domain Description: GIIM Note: maturase Location: 9321 80-932390 bp Feature: gene Location: 932989-933501 bp Feature: gene Location: 933523-934008 bp Feature: gene Location: 1052379-1053002 bp Feature: domain Description: adh_short_C2 Location: 1052430-1052898 bp Feature: domain Description: adh_short_C2 Location: 1 052430-1 052898 bp Feature: domain Description: fabG Location: 1052928-1052997 bp Feature: domain Description: fabG Location: 1 052928-1 052997 bp Feature: gene Location: 1053020-1053778 bp Feature: domain Description: Acyl-ACP_TE Location: 1053026-1053653 bp Feature: domain Description: Acyl-ACP_TE Location: 1 053026-1 053653 bp Feature: gene Location: 1054899-1056191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1055100-1055718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0551 00-1 05571 8 bp Feature: domain Description: GIIM Note: maturase Location: 1055772-1055982 bp Feature: domain Description: GIIM Note: maturase Location: 1 055772-1 055982 bp Feature: gene Location: 1056650-1057081 bp Feature: domain Description: MraZ Location: 1056653-1057055 bp Feature: domain Description: MraZ Location: 1 056653-1 057055 bp Feature: gene Location: 1057090-1058019 bp Feature: domain Description: RmsH Location: 1057096-1058017 bp Feature: domain Description: RmsH Location: 1 057096-1 05801 7 bp Feature: gene Location: 1166455-1166727 bp Feature: domain Description: Phage_holin_3_3 Location: 1166530-1166695 bp Feature: domain Description: Phage_holin_3_3 Location: 1 1 66530-1 1 66695 bp Feature: gene Location: 1167137-1168501 bp Feature: gene Location: 1170498-1171790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1170699-1171317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 70699-1 1 71 31 7 bp Feature: domain Description: GIIM Note: maturase Location: 1171371-1171581 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 71 371 -1 1 71 581 bp Feature: gene Location: 1172203-1172982 bp Feature: domain Description: YdiL Location: 1172314-1172890 bp Feature: domain Description: YdiL Location: 1 1 7231 4-1 1 72890 bp Feature: gene Location: 1173171-1173803 bp Feature: domain Description: YcaP Location: 1173186-1173798 bp Feature: domain Description: YcaP Location: 1 1 731 86-1 1 73798 bp Feature: gene Location: 1507430-1509190 bp Feature: domain Description: MdlB Location: 1507472-1509179 bp Feature: domain Description: MdlB Location: 1 507472-1 5091 79 bp Feature: gene Location: 1509495-1510334 bp Feature: domain Description: YitT Location: 1509507-1510323 bp Feature: domain Description: YitT Location: 1 509507-1 51 0323 bp Feature: gene Location: 1510678-1511970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1510879-1511497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 0879-1 51 1 497 bp Feature: domain Description: GIIM Note: maturase Location: 1511551-1511761 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 1 551 -1 51 1 761 bp Feature: gene Location: 1513166-1514488 bp Feature: domain Description: N6_N4_Mtase Location: 1513385-1514084 bp Feature: domain Description: N6_N4_Mtase Location: 1 51 3385-1 51 4084 bp Feature: gene Location: 1514798-1515958 bp Feature: domain Description: LTA_DltD Location: 1514816-1515950 bp Feature: domain Description: LTA_DltD Location: 1 51 481 6-1 51 5950 bp Feature: gene Location: 1761511-1762026 bp Feature: domain Description: PHA02517 Location: 1761547-1761964 bp Feature: domain Description: PHA0251 7 Location: 1 761 547-1 761 964 bp Feature: gene Location: 1762134-1762580 bp Feature: domain Description: HTH_21 Location: 1762452-1762569 bp Feature: domain Description: HTH_21 Location: 1 762452-1 762569 bp Feature: gene Location: 1762873-1764165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1763074-1763692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 763074-1 763692 bp Feature: domain Description: GIIM Note: maturase Location: 1763746-1763956 bp Feature: domain Description: GIIM Note: maturase Location: 1 763746-1 763956 bp Feature: gene Location: 1764893-1765351 bp Feature: domain Description: HTH_28 Location: 1764911-1765016 bp Feature: domain Description: HTH_28 Location: 1 76491 1 -1 76501 6 bp Feature: domain Description: HTH_28 Location: 1765097-1765220 bp Feature: domain Description: HTH_28 Location: 1 765097-1 765220 bp Feature: gene Location: 1765533-1766486 bp Feature: domain Description: 2a69 Location: 1765542-1766478 bp Feature: domain Description: 2a69 Location: 1 765542-1 766478 bp Feature: gene Location: 1766568-1768190 bp Feature: domain Description: PRK13529 Location: 1766574-1768188 bp Feature: domain Description: PRK1 3529 Location: 1 766574-1 7681 88 bp Feature: gene Location: 1768691-1769983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1768892-1769510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 768892-1 76951 0 bp Feature: domain Description: GIIM Note: maturase Location: 1769564-1769774 bp Feature: domain Description: GIIM Note: maturase Location: 1 769564-1 769774 bp Feature: gene Location: 1771352-1772527 bp Feature: domain Description: DUF4317 Location: 1771355-1772471 bp Feature: domain Description: DUF431 7 Location: 1 771 355-1 772471 bp Feature: gene Location: 1772664-1773209 bp Feature: domain Description: DUF5104 Location: 1772808-1773120 bp Feature: domain Description: DUF51 04 Location: 1 772808-1 7731 20 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T7_EssCb_Firm (TIGR03928), RVT-GII, GIIM (pfam08388), LRR_4 (pfam12799), HipB (COG1396), ddl (PRK01966), YqhQ (COG3872), PRK09328 (N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional), DUF4180 (pfam13788), DDE_Tnp_ISL3 (pfam01610)
SR_ResInv (cd03768), SpaA (pfam17802), Flg_new (pfam09479), CollagenBindB (cl15753), COG3464 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), YejR (COG0523), CobW-like (cd03112), TIGR03943 (TIGR03943 family protein)
OmpR (COG0745), NptA (COG1283), PRK05322 (galactokinase; Provisional), DUF975 (pfam06161), PRK09604 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD), Uup (COG0488), acpP (PRK00982), Fer4 (pfam00037), Asp23 (pfam03780), adh_short_C2 (pfam13561)
fabG (PRK12825), Acyl-ACP_TE (pfam01643), MraZ (pfam02381), RmsH (COG0275), Phage_holin_3_3 (pfam16083), YdiL (COG1266), YcaP (COG2323), MdlB (COG1132), YitT (COG1284), N6_N4_Mtase (pfam01555)
LTA_DltD (TIGR04092), HTH_21 (pfam13276), HTH_28 (pfam13518), 2a69 (TIGR00946), PRK13529 (oxaloacetate-decarboxylating malate dehydrogenase), DUF4317 (pfam14199), DUF5104 (pfam17117)