myRT

myRT report for GCA_002245975.1_ASM224597v1

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Seq: NOLI01000062.1 Nostoc sp. 'Peltigera membranacea cyanobiont' 213 scaffold62, whole genome shotgun sequence (43682 bp)
Overview 1 RT 1: 19442-27751 bp Neighborhood of RT #1 [19442, 27751] RVT-UG19 YprA YprA Feature: gene Location: 19442-19543 bp Feature: gene Location: 19513-19782 bp Feature: gene Location: 19893-22298 bp Ori: OYD89894.1 Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 20274-20757 bp Feature: RT Description: RVT-UG1 9 Note: UG1 9 RT Location: 20274-20757 bp Feature: gene Location: 22497-27020 bp Ori: OYD89895.1 Feature: domain Description: YprA Location: 22971-23826 bp Feature: domain Description: YprA Location: 22971 -23826 bp Feature: domain Description: YprA Location: 24243-24417 bp Feature: domain Description: YprA Location: 24243-2441 7 bp Feature: gene Location: 27044-27751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG19, YprA (COG1205)

Seq: NOLI01000002.1 Nostoc sp. 'Peltigera membranacea cyanobiont' 213 scaffold2, whole genome shotgun sequence (121540 bp)
Overview 1 RT 1: 33064-39140 bp Neighborhood of RT #1 [33064, 39140] DUF4238 SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 RVT-Retrons COP23 Feature: gene Location: 33064-34011 bp Ori: OYD99459.1 Feature: domain Description: DUF4238 Location: 33082-33988 bp Feature: domain Description: DUF42 38 Location: 33082 -33988 bp Feature: gene Location: 34102-35640 bp Ori: OYD99460.1 Feature: domain Description: SPFH_eoslipins_u2 Location: 34135-34285 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 34135-342 85 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 34534-34642 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 34534-34642 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 34954-35593 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 34954-35593 bp Feature: gene Location: 36457-37542 bp Ori: OYD99461.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36670-37279 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36670-372 79 bp Feature: gene Location: 38229-38723 bp Ori: OYD99462.1 Feature: domain Description: COP23 Location: 38334-38676 bp Feature: domain Description: COP2 3 Location: 38334-38676 bp Feature: gene Location: 38856-39140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4238 (pfam14022), SPFH_eoslipins_u2 (cd13438), RVT-Retrons, COP23 (pfam14218)

Seq: NOLI01000046.1 Nostoc sp. 'Peltigera membranacea cyanobiont' 213 scaffold46, whole genome shotgun sequence (50314 bp)
Overview 1 RT 1: 14100-20019 bp Neighborhood of RT #1 [14100, 20072] PLN02653 GDP_FS_SDR_e RVT_N RVT-GII FAU1 y4iL_like Feature: gene Location: 14100-15179 bp Ori: OYD92156.1 Gene: gmd Feature: domain Description: PLN02653 Location: 14106-15093 bp Feature: domain Description: PLN02653 Location: 14106-15093 bp Feature: gene Location: 15204-16148 bp Ori: OYD92157.1 Feature: domain Description: GDP_FS_SDR_e Location: 15234-16134 bp Feature: domain Description: GDP_FS_SDR_e Location: 1523 4-1613 4 bp Feature: gene Location: 16882-18463 bp Feature: domain Description: RVT_N Location: 16918-17158 bp Feature: domain Description: RVT_N Location: 16918-17158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17215-17719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17215-17719 bp Feature: gene Location: 18540-19025 bp Feature: domain Description: FAU1 Location: 18549-19014 bp Feature: domain Description: FAU1 Location: 18549-19014 bp Feature: gene Location: 19035-20072 bp Ori: OYD92158.1 Feature: domain Description: y4iL_like Location: 19158-20019 bp Feature: domain Description: y4iL_like Location: 19158-20019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLN02653 (GDP-mannose 4,6-dehydratase), GDP_FS_SDR_e (cd05239), RVT_N (pfam13655), RVT-GII, FAU1 (COG0212), y4iL_like (cd08152)

Seq: NOLI01000236.1 Nostoc sp. 'Peltigera membranacea cyanobiont' 213 scaffold236, whole genome shotgun sequence (5887 bp)
Overview 1 RT 1: 168-4846 bp Neighborhood of RT #1 [168, 4846] Methyltransf_23 BHL RVT_N RVT-GII McrA Feature: gene Location: 168-1091 bp Ori: OYD86810.1 Feature: domain Description: Methyltransf_23 Location: 423-756 bp Feature: domain Description: Methyltransf_23 Location: 4 23-756 bp Feature: gene Location: 1419-1694 bp Ori: OYD86811.1 Feature: domain Description: BHL Location: 1422-1686 bp Feature: domain Description: BHL Location: 14 22-1686 bp Feature: gene Location: 1956-3500 bp Ori: OYD86812.1 Feature: domain Description: RVT_N Location: 1992-2232 bp Feature: domain Description: RVT_N Location: 1992-2232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2289-2916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2289-2916 bp Feature: domain Description: McrA Location: 3162-3477 bp Feature: domain Description: McrA Location: 3162-34 77 bp Feature: gene Location: 4108-4437 bp Feature: gene Location: 4646-4846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_23 (pfam13489), BHL (smart00411), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: NOLI01000125.1 Nostoc sp. 'Peltigera membranacea cyanobiont' 213 scaffold125, whole genome shotgun sequence (23441 bp)
Overview 1 RT 1: 54-3891 bp Neighborhood of RT #1 [54, 3891] McrA RVT_N RVT-GII GIIM McrA Feature: gene Location: 54-440 bp Ori: OYD88025.1 Feature: domain Description: McrA Location: 87-417 bp Feature: domain Description: McrA Location: 87-417 bp Feature: gene Location: 1102-2700 bp Ori: OYD88026.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1159-1402 bp Feature: domain Description: RVT_N Location: 115 9-1402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1456-2107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145 6-2107 bp Feature: domain Description: GIIM Note: maturase Location: 2167-2362 bp Feature: domain Description: GIIM Note: maturase Location: 2167-2362 bp Feature: domain Description: McrA Location: 2410-2674 bp Feature: domain Description: McrA Location: 2410-2674 bp Feature: gene Location: 2944-3489 bp Feature: gene Location: 3568-3891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT McrA (COG4058), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NOLI01000219.1 Nostoc sp. 'Peltigera membranacea cyanobiont' 213 scaffold219, whole genome shotgun sequence (8436 bp)
Overview 1 RT 1: 2527-6813 bp Neighborhood of RT #1 [2527, 6866] RAMP_I_III Cmr1_III-B RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2527-3789 bp Feature: domain Description: RAMP_I_III Location: 2944-3358 bp Feature: domain Description: RAMP_I_III Location: 2944-3358 bp Feature: gene Location: 3779-4912 bp Ori: OYD86912.1 Gene: cmr1 Feature: domain Description: Cmr1_III-B Location: 3782-4310 bp Feature: domain Description: Cmr1_III-B Location: 3782-4310 bp Feature: gene Location: 5166-6866 bp Ori: OYD86913.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5211-5451 bp Feature: domain Description: RVT_N Location: 5211-5451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5505-6144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5505-6 144 bp Feature: domain Description: GIIM Note: maturase Location: 6219-6450 bp Feature: domain Description: GIIM Note: maturase Location: 6 219-6 450 bp Feature: domain Description: HNHc Note: nucleases Location: 6654-6813 bp Feature: domain Description: HNHc Note: nucleases Location: 6 6 54-6 813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAMP_I_III (cl21471), Cmr1_III-B (cd09657), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NOLI01000190.1 Nostoc sp. 'Peltigera membranacea cyanobiont' 213 scaffold190, whole genome shotgun sequence (11420 bp)
Overview 1 RT 1: 6327-10775 bp Neighborhood of RT #1 [6327, 10775] RVT_N RVT-GII Feature: gene Location: 6327-6524 bp Feature: gene Location: 6613-6945 bp Feature: gene Location: 7953-9528 bp Feature: domain Description: RVT_N Location: 7989-8229 bp Feature: domain Description: RVT_N Location: 7 989-8229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8286-8919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8286-8919 bp Feature: gene Location: 9543-10382 bp Feature: gene Location: 10404-10775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: NOLI01000152.1 Nostoc sp. 'Peltigera membranacea cyanobiont' 213 scaffold152, whole genome shotgun sequence (18914 bp)
Overview 1 RT 1: 10224-15835 bp Neighborhood of RT #1 [10224, 18531] Cas2_I_II_III Cas_Cas1 RVT-CRISPR cas1 NACHT Feature: gene Location: 10224-10502 bp Ori: OYD87595.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 10233-10464 bp Feature: domain Description: Cas2_I_II_III Location: 10233-10464 bp Feature: gene Location: 10502-11545 bp Ori: OYD87591.1 Gene: cas1 Feature: domain Description: Cas_Cas1 Location: 10514-11261 bp Feature: domain Description: Cas_Cas1 Location: 10514-11261 bp Feature: gene Location: 12580-14586 bp Ori: OYD87592.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 12769-13375 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 12769-13375 bp Feature: domain Description: cas1 Location: 13591-14554 bp Feature: domain Description: cas1 Location: 13591-14554 bp Feature: gene Location: 14962-18531 bp Ori: OYD87593.1 Feature: domain Description: NACHT Location: 15370-15835 bp Feature: domain Description: NACHT Location: 15370-158 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas_Cas1 (pfam01867), RVT-CRISPR, cas1 (TIGR00287), NACHT (pfam05729)

Seq: NOLI01000259.1 Nostoc sp. 'Peltigera membranacea cyanobiont' 213 scaffold259, whole genome shotgun sequence (4966 bp)
Overview 1 RT 1: 46-4966 bp Neighborhood of RT #1 [46, 4966] Transposase_31 RVT_N RVT-GII YkfC HNH Feature: gene Location: 46-399 bp Ori: OYD86737.1 Feature: domain Description: Transposase_31 Location: 55-343 bp Feature: domain Description: Transposase_31 Location: 55-343 bp Feature: gene Location: 938-2800 bp Gene: ltrA Feature: domain Description: RVT_N Location: 974-1220 bp Feature: domain Description: RVT_N Location: 9 74-1220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1262-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1262-19 49 bp Feature: domain Description: YkfC Location: 2114-2483 bp Feature: domain Description: YkfC Location: 2114-2483 bp Feature: domain Description: HNH Note: nucleases Location: 2507-2642 bp Feature: domain Description: HNH Note: nucleases Location: 2507-2642 bp Feature: gene Location: 2810-3229 bp Feature: gene Location: 3718-4966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_31 (pfam04754), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844)