myRT

myRT report for GCA_002245985.1_ASM224598v1

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Seq: NOLK01000351.1 Nostoc sp. 'Peltigera membranacea cyanobiont' 232 scaffold351, whole genome shotgun sequence (2142 bp)
Overview 1 RT 1: 361-2136 bp Neighborhood of RT #1 [361, 2142] RVT-CRISPR Cas_Cas1 Feature: gene Location: 361-1314 bp Ori: OYD98679.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 568-1174 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 568-1 1 74 bp Feature: gene Location: 1332-2142 bp Ori: OYD98678.1 Gene: cas1 Feature: domain Description: Cas_Cas1 Location: 1476-2136 bp Feature: domain Description: Cas_Cas1 Location: 1 476-21 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas_Cas1 (pfam01867)

Seq: NOLK01000205.1 Nostoc sp. 'Peltigera membranacea cyanobiont' 232 scaffold205, whole genome shotgun sequence (12021 bp)
Overview 1 RT 1: 2830-7239 bp Neighborhood of RT #1 [2830, 7239] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR Feature: gene Location: 2830-3105 bp Ori: OYE00326.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 2839-3067 bp Feature: domain Description: Cas2 _I_II_III Location: 2 839-3067 bp Feature: gene Location: 3106-4110 bp Ori: OYE00327.1 Gene: cas1 Feature: domain Description: Cas1_I-II-III Location: 3118-4072 bp Feature: domain Description: Cas1_I-II-III Location: 3118-4072 bp Feature: gene Location: 4260-5213 bp Ori: OYE00328.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4467-5073 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4467-5073 bp Feature: gene Location: 5670-6611 bp Feature: gene Location: 6907-7239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR

Seq: NOLK01000029.1 Nostoc sp. 'Peltigera membranacea cyanobiont' 232 scaffold29, whole genome shotgun sequence (72893 bp)
Overview 1 RT 1: 27214-33342 bp Neighborhood of RT #1 [27214, 33356] InsQ RVT_N RVT-GII GIIM HNHc COG1641 Feature: gene Location: 27214-27411 bp Feature: gene Location: 27478-28781 bp Feature: domain Description: InsQ Location: 27481-28543 bp Feature: domain Description: InsQ Location: 27481-28543 bp Feature: gene Location: 29595-31442 bp Ori: OYE04604.1 Gene: ltrA Feature: domain Description: RVT_N Location: 29640-29886 bp Feature: domain Description: RVT_N Location: 29640-29886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29928-30603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29928-3 0603 bp Feature: domain Description: GIIM Note: maturase Location: 30714-30918 bp Feature: domain Description: GIIM Note: maturase Location: 3 0714-3 0918 bp Feature: domain Description: HNHc Note: nucleases Location: 31140-31290 bp Feature: domain Description: HNHc Note: nucleases Location: 3 1140-3 1290 bp Feature: gene Location: 31683-31901 bp Feature: gene Location: 32073-33356 bp Ori: OYE04571.1 Feature: domain Description: COG1641 Location: 32082-33342 bp Feature: domain Description: COG1641 Location: 3 2082-3 3 3 42 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG1641 (Uncharacterized conserved protein, DUF111 family )

Seq: NOLK01000259.1 Nostoc sp. 'Peltigera membranacea cyanobiont' 232 scaffold259, whole genome shotgun sequence (6325 bp)
Overview 1 RT 1: 442-3342 bp Neighborhood of RT #1 [442, 3342] RVT_N RVT-GII GIIM McrA ParM_like Feature: gene Location: 442-630 bp Feature: gene Location: 686-2221 bp Ori: OYD99917.1 Feature: domain Description: RVT_N Location: 725-917 bp Feature: domain Description: RVT_N Location: 725-917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 980-1634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 980-1634 bp Feature: domain Description: GIIM Note: maturase Location: 1691-1850 bp Feature: domain Description: GIIM Note: maturase Location: 1691-1850 bp Feature: domain Description: McrA Location: 1871-2189 bp Feature: domain Description: McrA Location: 1871-2189 bp Feature: gene Location: 2305-3105 bp Feature: domain Description: ParM_like Location: 2353-3076 bp Feature: domain Description: ParM_like Location: 2353-3076 bp Feature: gene Location: 3109-3342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), ParM_like (cd10227)

Seq: NOLK01000080.1 Nostoc sp. 'Peltigera membranacea cyanobiont' 232 scaffold80, whole genome shotgun sequence (35306 bp)
Overview 1 RT 1: 12377-18596 bp Neighborhood of RT #1 [12377, 18619] COP23 RVT-Retrons SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 DUF4238 Feature: gene Location: 12377-12661 bp Feature: gene Location: 12981-13475 bp Ori: OYE02493.1 Feature: domain Description: COP23 Location: 13086-13446 bp Feature: domain Description: COP23 Location: 13086-13446 bp Feature: gene Location: 14159-15244 bp Ori: OYE02494.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14372-14981 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14372-14981 bp Feature: gene Location: 16035-17570 bp Ori: OYE02495.1 Feature: domain Description: SPFH_eoslipins_u2 Location: 16068-16218 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 16068-16218 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 16467-16575 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 16467-165 75 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 16887-17526 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 16887-175 26 bp Feature: gene Location: 17669-18619 bp Ori: OYE02496.1 Feature: domain Description: DUF4238 Location: 17690-18596 bp Feature: domain Description: DUF4238 Location: 17690-185 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COP23 (pfam14218), RVT-Retrons, SPFH_eoslipins_u2 (cd13438), DUF4238 (pfam14022)

Seq: NOLK01000068.1 Nostoc sp. 'Peltigera membranacea cyanobiont' 232 scaffold68, whole genome shotgun sequence (40605 bp)
Overview 1 RT 1: 5413-10733 bp Neighborhood of RT #1 [5413, 10753] DDE_3 DnaB RVT_N RVT-GII GIIM McrA DUF3611 COG4803 Feature: gene Location: 5413-6021 bp Ori: OYE02875.1 Feature: domain Description: DDE_3 Location: 5419-5932 bp Feature: domain Description: DDE_3 Location: 5419-5932 bp Feature: gene Location: 6049-6198 bp Feature: domain Description: DnaB Location: 6052-6199 bp Feature: domain Description: DnaB Location: 6 052-6 199 bp Feature: gene Location: 6784-8613 bp Ori: OYE02852.1 Gene: ltrA Feature: domain Description: RVT_N Location: 6820-7066 bp Feature: domain Description: RVT_N Location: 6 820-706 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7108-7807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7108-7807 bp Feature: domain Description: GIIM Note: maturase Location: 7906-8140 bp Feature: domain Description: GIIM Note: maturase Location: 7906 -8140 bp Feature: domain Description: McrA Location: 8236-8518 bp Feature: domain Description: McrA Location: 8236 -8518 bp Feature: gene Location: 9666-10229 bp Ori: OYE02853.1 Feature: domain Description: DUF3611 Location: 9705-10218 bp Feature: domain Description: DUF36 11 Location: 9705-10218 bp Feature: gene Location: 10241-10753 bp Ori: OYE02854.1 Feature: domain Description: COG4803 Location: 10244-10733 bp Feature: domain Description: COG4803 Location: 10244-10733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), DnaB (TIGR00665), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), DUF3611 (pfam12263), COG4803 (Uncharacterized membrane protein )

Seq: NOLK01000018.1 Nostoc sp. 'Peltigera membranacea cyanobiont' 232 scaffold18, whole genome shotgun sequence (81967 bp)
Overview 1 RT 1: 1790-5674 bp Neighborhood of RT #1 [1790, 5674] PLN02585 RVT_N RVT-GII GIIM McrA PLN02585 Feature: gene Location: 1790-2068 bp Feature: gene Location: 2193-2663 bp Feature: domain Description: PLN02585 Location: 2196-2658 bp Feature: domain Description: PLN02585 Location: 2196-2658 bp Feature: gene Location: 2670-4598 bp Gene: ltrA Feature: domain Description: RVT_N Location: 2808-3054 bp Feature: domain Description: RVT_N Location: 2808-3054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3096-3810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3096-3810 bp Feature: domain Description: GIIM Note: maturase Location: 3894-4122 bp Feature: domain Description: GIIM Note: maturase Location: 3894-4122 bp Feature: domain Description: McrA Location: 4188-4527 bp Feature: domain Description: McrA Location: 4188-4527 bp Feature: gene Location: 5137-5352 bp Feature: domain Description: PLN02585 Location: 5149-5353 bp Feature: domain Description: PLN02585 Location: 5149-5353 bp Feature: gene Location: 5450-5674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLN02585 (magnesium protoporphyrin IX methyltransferase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)