myRT

myRT report for GCA_002246165.1_ASM224616v1

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Seq: NPZM01000012.1 Shigella sonnei strain ECCRETH04 36-CREC058-1_NODE_8.ctg_1, whole genome shotgun sequence (166108 bp)
Overview 1 RT 1: 22420-28451 bp Neighborhood of RT #1 [22420, 28588] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22420-22560 bp Ori: OYE58293.1 Feature: domain Description: SfsB Location: 22429-22501 bp Feature: domain Description: SfsB Location: 22429-22501 bp Feature: gene Location: 22557-23027 bp Feature: gene Location: 23374-26583 bp Ori: OYE58295.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23902-24391 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23902-24391 bp Feature: domain Description: nitrilase Location: 25897-26494 bp Feature: domain Description: nitrilase Location: 25897-26494 bp Feature: gene Location: 26878-27681 bp Ori: OYE58296.1 Feature: domain Description: AbiEi_3_N Location: 26911-27172 bp Feature: domain Description: AbiEi_3_N Location: 2691 1 -271 72 bp Feature: domain Description: AbiEi_3 Location: 27184-27640 bp Feature: domain Description: AbiEi_3 Location: 271 84-27640 bp Feature: gene Location: 27668-28588 bp Ori: OYE58297.1 Feature: domain Description: AbiEii Location: 27710-28451 bp Feature: domain Description: AbiEii Location: 2771 0-28451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: NPZM01000131.1 Shigella sonnei strain ECCRETH04 36-CREC058-1_NODE_45.ctg_1, whole genome shotgun sequence (26726 bp)
Overview 1 RT 1: 23952-26627 bp Neighborhood of RT #1 [23952, 26714] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 23952-25181 bp Ori: OYE48330.1 Feature: domain Description: YesM Location: 24432-25173 bp Feature: domain Description: YesM Location: 2 4432 -2 5173 bp Feature: gene Location: 25254-25442 bp Feature: gene Location: 25764-26285 bp Ori: OYE48332.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25770-26052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5770-2 6052 bp Feature: domain Description: GIIM Note: maturase Location: 26100-26280 bp Feature: domain Description: GIIM Note: maturase Location: 2 6100-2 62 80 bp Feature: gene Location: 26357-26714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26549-26627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6549-2 662 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: NPZM01000108.1 Shigella sonnei strain ECCRETH04 36-CREC058-1_NODE_90.ctg_1, whole genome shotgun sequence (6178 bp)
Overview 1 RT 1: 1-3406 bp Neighborhood of RT #1 [1, 3507] RVT_N RVT-GII GIIM HNHc AdoMet_MTases Feature: gene Location: 1-250 bp Feature: gene Location: 908-2575 bp Ori: OYE49731.1 Gene: ltrA Feature: domain Description: RVT_N Location: 956-1193 bp Feature: domain Description: RVT_N Location: 956-1193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1244-1886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1244-1886 bp Feature: domain Description: GIIM Note: maturase Location: 1937-2171 bp Feature: domain Description: GIIM Note: maturase Location: 193 7-2171 bp Feature: domain Description: HNHc Note: nucleases Location: 2381-2540 bp Feature: domain Description: HNHc Note: nucleases Location: 23 81-2540 bp Feature: gene Location: 2553-2963 bp Feature: gene Location: 2944-3507 bp Ori: OYE49732.1 Feature: domain Description: AdoMet_MTases Location: 3106-3406 bp Feature: domain Description: AdoMet_MTases Location: 3 106-3 406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AdoMet_MTases (cl17173)

Seq: NPZM01000093.1 Shigella sonnei strain ECCRETH04 36-CREC058-1_NODE_96.ctg_1, whole genome shotgun sequence (4644 bp)
Overview 1 RT 1: 2769-4606 bp Neighborhood of RT #1 [2769, 4644] Asparaginase_2 RVT-GII RVT-GII Feature: gene Location: 2769-3800 bp Ori: OYE50979.1 Feature: domain Description: Asparaginase_2 Location: 2859-3792 bp Feature: domain Description: Asparaginase_2 Location: 2859-3792 bp Feature: gene Location: 3958-4160 bp Feature: gene Location: 4208-4372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4220-4367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 220-4 367 bp Feature: gene Location: 4324-4644 bp Ori: OYE50980.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4504-4606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 504 -4 606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII