myRT

myRT report for GCA_002246195.1_ASM224619v1

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Seq: NPZN01000012.1 Shigella sonnei strain ECCRETH05 37-CREC058-2_NODE_8.ctg_1, whole genome shotgun sequence (166882 bp)
Overview 1 RT 1: 137521-143630 bp Neighborhood of RT #1 [137521, 143689] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Feature: gene Location: 137521-138441 bp Ori: OYE72902.1 Feature: domain Description: AbiEii Location: 137563-138304 bp Feature: domain Description: AbiEii Location: 1 37563-1 38304 bp Feature: gene Location: 138428-139231 bp Ori: OYE72903.1 Feature: domain Description: AbiEi_3_N Location: 138461-138722 bp Feature: domain Description: AbiEi_3_N Location: 1 38461 -1 38722 bp Feature: domain Description: AbiEi_3 Location: 138734-139190 bp Feature: domain Description: AbiEi_3 Location: 1 38734-1 391 90 bp Feature: gene Location: 139526-142735 bp Ori: OYE72904.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 140054-140543 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 40054-1 40543 bp Feature: domain Description: nitrilase Location: 142049-142646 bp Feature: domain Description: nitrilase Location: 1 42049-1 42646 bp Feature: gene Location: 143082-143552 bp Feature: gene Location: 143549-143689 bp Ori: OYE72906.1 Feature: domain Description: SfsB Location: 143558-143630 bp Feature: domain Description: SfsB Location: 1 43558-1 43630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423)

Seq: NPZN01000156.1 Shigella sonnei strain ECCRETH05 37-CREC058-2_NODE_45.ctg_1, whole genome shotgun sequence (26981 bp)
Overview 1 RT 1: 13-3824 bp Neighborhood of RT #1 [13, 3847] RVT-GII RVT-GII GIIM YesM YesN YesN Feature: gene Location: 13-370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 05-2 83 bp Feature: gene Location: 442-963 bp Ori: OYE59585.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448-730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448-730 bp Feature: domain Description: GIIM Note: maturase Location: 778-958 bp Feature: domain Description: GIIM Note: maturase Location: 778-958 bp Feature: gene Location: 1546-2775 bp Ori: OYE59586.1 Feature: domain Description: YesM Location: 2026-2767 bp Feature: domain Description: YesM Location: 2 02 6-2 767 bp Feature: gene Location: 2792-3847 bp Ori: OYE59587.1 Feature: domain Description: YesN Location: 2795-3185 bp Feature: domain Description: YesN Location: 2 795-3185 bp Feature: domain Description: YesN Location: 3527-3824 bp Feature: domain Description: YesN Location: 352 7-382 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972), YesN (COG4753)

Seq: NPZN01000165.1 Shigella sonnei strain ECCRETH05 37-CREC058-2_NODE_60.ctg_1, whole genome shotgun sequence (13346 bp)
Overview 1 RT 1: 5941-9679 bp Neighborhood of RT #1 [5941, 9679] AdoMet_MTases RVT_N RVT-GII GIIM HNHc Feature: gene Location: 5941-6504 bp Ori: OYE58157.1 Feature: domain Description: AdoMet_MTases Location: 6103-6403 bp Feature: domain Description: AdoMet_MTases Location: 6103 -6403 bp Feature: gene Location: 6485-6895 bp Feature: gene Location: 6873-8540 bp Ori: OYE58158.1 Gene: ltrA Feature: domain Description: RVT_N Location: 6921-7158 bp Feature: domain Description: RVT_N Location: 6921-7158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7209-7851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7209-7851 bp Feature: domain Description: GIIM Note: maturase Location: 7902-8136 bp Feature: domain Description: GIIM Note: maturase Location: 7902-813 6 bp Feature: domain Description: HNHc Note: nucleases Location: 8346-8505 bp Feature: domain Description: HNHc Note: nucleases Location: 83 46-8505 bp Feature: gene Location: 9322-9516 bp Feature: gene Location: 9443-9679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NPZN01000015.1 Shigella sonnei strain ECCRETH05 37-CREC058-2_NODE_92.ctg_1, whole genome shotgun sequence (4644 bp)
Overview 1 RT 1: 2769-4606 bp Neighborhood of RT #1 [2769, 4644] Asparaginase_2 RVT-GII RVT-GII Feature: gene Location: 2769-3800 bp Ori: OYE72735.1 Feature: domain Description: Asparaginase_2 Location: 2859-3792 bp Feature: domain Description: Asparaginase_2 Location: 2859-3792 bp Feature: gene Location: 3958-4160 bp Feature: gene Location: 4208-4372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4220-4367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 220-4 367 bp Feature: gene Location: 4324-4644 bp Ori: OYE72736.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4504-4606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 504 -4 606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII