myRT

myRT report for GCA_002246485.2_ASM224648v2

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Seq: NQAI02000003.1 Escherichia coli strain ECCTRPRTH03 ECCTRPRTH03_contig_3, whole genome shotgun sequence (117464 bp)
Overview 1 RT 1: 47873-51925 bp Neighborhood of RT #1 [47873, 51930] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 47873-48144 bp Feature: gene Location: 48248-48454 bp Feature: gene Location: 49103-51004 bp Ori: TNK49121.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49370-50201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49370-50201 bp Feature: domain Description: Intron_maturas2 Location: 50315-50573 bp Feature: domain Description: Intron_maturas2 Location: 5031 5-50573 bp Feature: domain Description: HNHc Note: nucleases Location: 50747-50909 bp Feature: domain Description: HNHc Note: nucleases Location: 50747-50909 bp Feature: gene Location: 51154-51639 bp Ori: TNK49122.1 Gene: ssb Feature: domain Description: PRK13732 Location: 51157-51637 bp Feature: domain Description: PRK1 3732 Location: 51 1 57-51 637 bp Feature: gene Location: 51697-51930 bp Ori: TNK49123.1 Feature: domain Description: DUF905 Location: 51727-51925 bp Feature: domain Description: DUF905 Location: 51 727-51 925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: NQAI02000002.1 Escherichia coli strain ECCTRPRTH03 ECCTRPRTH03_contig_2, whole genome shotgun sequence (775918 bp)
Overview 1 RT 1: 229176-236986 bp Neighborhood of RT #1 [229176, 236991] Phage_GPA RVT-AbiP2 RVT-Retrons Q Feature: gene Location: 229176-231452 bp Ori: TNK49726.1 Feature: domain Description: Phage_GPA Location: 229575-230562 bp Feature: domain Description: Phage_GPA Location: 2 2 9575-2 30562 bp Feature: gene Location: 231556-231774 bp Feature: gene Location: 231940-233484 bp Ori: TNK49728.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 232357-232810 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 32 357-2 32 810 bp Feature: gene Location: 233999-235225 bp Ori: TNK49729.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 234185-234767 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 34185-2 34767 bp Feature: gene Location: 235222-235929 bp Feature: gene Location: 235972-236991 bp Ori: TNK49731.1 Feature: domain Description: Q Location: 235975-236986 bp Feature: domain Description: Q Location: 2 35975-2 36986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-AbiP2, RVT-Retrons, Q (PHA02536)

Seq: NQAI02000005.1 Escherichia coli strain ECCTRPRTH03 ECCTRPRTH03_contig_5, whole genome shotgun sequence (82430 bp)
Overview 1 RT 1: 35568-39021 bp Neighborhood of RT #1 [35568, 39059] PRK10276 RVT-GII Zn_Tnp_IS1 HTH_Tnp_IS1 Rep_3 Feature: gene Location: 35568-35999 bp Ori: TNK48831.1 Gene: umuD Feature: domain Description: PRK10276 Location: 35619-35982 bp Feature: domain Description: PRK10276 Location: 3 5619-3 5982 bp Feature: gene Location: 36157-36408 bp Feature: gene Location: 36408-37892 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36810-37500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6810-3 7500 bp Feature: gene Location: 38044-38741 bp Feature: domain Description: Zn_Tnp_IS1 Location: 38050-38152 bp Feature: domain Description: Zn_Tnp_IS1 Location: 3 8050-3 8152 bp Feature: domain Description: HTH_Tnp_IS1 Location: 38173-38305 bp Feature: domain Description: HTH_Tnp_IS1 Location: 3 8173 -3 83 05 bp Feature: gene Location: 38751-39059 bp Feature: domain Description: Rep_3 Location: 38757-39021 bp Feature: domain Description: Rep_3 Location: 3 8757-3 9021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), Rep_3 (pfam01051)