myRT

myRT report for GCA_002246945.1_ASM224694v1

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Seq: LYXD01000005.1 Streptococcus agalactiae strain Hn1404 contig5, whole genome shotgun sequence (1794111 bp)
Overview 1 RT 1: 249914-256939 bp 2 RT 2: 264269-270471 bp 3 RT 3: 302747-310121 bp 4 RT 4: 481699-487740 bp 5 RT 5: 652483-657560 bp 6 RT 6: 1242106-1249328 bp 7 RT 7: 1294653-1303194 bp 8 RT 8: 1720853-1726633 bp Neighborhood of RT #1 [249914, 256944] murG FtsQ RVT-GII GIIM FtsA PRK09330 Neighborhood of RT #2 [264269, 270476] McsA ClpA YkuJ RVT-GII GIIM HisM GlnQ Neighborhood of RT #3 [302747, 310135] TTHA1623-like_MBL-fold PRK08643 RVT-GII RVT-GII GIIM PRK07246 PRK05764 Neighborhood of RT #4 [481699, 487742] Cof PRK10416 RVT-GII RVT-GII GIIM YcgQ YraQ Neighborhood of RT #5 [652483, 657565] lipoyltrans RVT-GII GIIM COG3442 MurE Neighborhood of RT #6 [1242106, 1249333] DUF4956 PolyPPase_VTC_like RVT-GII GIIM Branch_AA_trans PRK12267 Neighborhood of RT #7 [1294653, 1303196] MurC RVT-GII GIIM HepA Der Neighborhood of RT #8 [1720853, 1726641] rpmF rpmG RVT-GII GIIM Surf_Exclu_PgrA Surf_Exclu_PgrA Surf_Exclu_PgrA LPXTG_anchor Feature: gene Location: 249914-250990 bp Feature: domain Description: murG Location: 249923-250958 bp Feature: domain Description: murG Location: 249923-250958 bp Feature: gene Location: 250994-252121 bp Feature: domain Description: FtsQ Location: 251240-251954 bp Feature: domain Description: FtsQ Location: 251 240-251 954 bp Feature: gene Location: 252658-253968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252895-253510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252895-25351 0 bp Feature: domain Description: GIIM Note: maturase Location: 253564-253780 bp Feature: domain Description: GIIM Note: maturase Location: 253564-253780 bp Feature: gene Location: 254269-255642 bp Feature: domain Description: FtsA Location: 254272-255637 bp Feature: domain Description: FtsA Location: 254272-255637 bp Feature: gene Location: 255664-256944 bp Feature: domain Description: PRK09330 Location: 255676-256939 bp Feature: domain Description: PRK09330 Location: 255676-256939 bp Feature: gene Location: 264269-266530 bp Feature: domain Description: McsA Location: 264272-264371 bp Feature: domain Description: McsA Location: 264272-264371 bp Feature: domain Description: ClpA Location: 264569-266483 bp Feature: domain Description: ClpA Location: 264569-266483 bp Feature: gene Location: 266828-267058 bp Feature: domain Description: YkuJ Location: 266834-267056 bp Feature: domain Description: YkuJ Location: 266834-267056 bp Feature: gene Location: 267575-268885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 267812-268427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26781 2-268427 bp Feature: domain Description: GIIM Note: maturase Location: 268481-268697 bp Feature: domain Description: GIIM Note: maturase Location: 268481 -268697 bp Feature: gene Location: 269051-269749 bp Feature: domain Description: HisM Location: 269063-269726 bp Feature: domain Description: HisM Location: 269063-269726 bp Feature: gene Location: 269742-270476 bp Feature: domain Description: GlnQ Location: 269757-270471 bp Feature: domain Description: GlnQ Location: 269757-270471 bp Feature: gene Location: 302747-303382 bp Feature: domain Description: TTHA1623-like_MBL-fold Location: 302783-303374 bp Feature: domain Description: TTHA1 623-like_MBL-fold Location: 302783-303374 bp Feature: gene Location: 303586-304377 bp Feature: domain Description: PRK08643 Location: 303616-304375 bp Feature: domain Description: PRK08643 Location: 30361 6-304375 bp Feature: gene Location: 304907-305263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305144-305252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3051 44-305252 bp Feature: gene Location: 305266-306219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305272-305761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305272-305761 bp Feature: domain Description: GIIM Note: maturase Location: 305815-306034 bp Feature: domain Description: GIIM Note: maturase Location: 30581 5-306034 bp Feature: gene Location: 306391-308856 bp Feature: domain Description: PRK07246 Location: 306394-308854 bp Feature: domain Description: PRK07246 Location: 306394-308854 bp Feature: gene Location: 308942-310135 bp Feature: domain Description: PRK05764 Location: 308948-310121 bp Feature: domain Description: PRK05764 Location: 308948-31 01 21 bp Feature: gene Location: 481699-482523 bp Feature: domain Description: Cof Location: 481708-482509 bp Feature: domain Description: Cof Location: 481 708-482509 bp Feature: gene Location: 482523-484133 bp Feature: domain Description: PRK10416 Location: 482847-484122 bp Feature: domain Description: PRK1 041 6 Location: 482847-4841 22 bp Feature: gene Location: 484651-485100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 484888-485089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 484888-485089 bp Feature: gene Location: 485072-485962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 485090-485504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 485090-485504 bp Feature: domain Description: GIIM Note: maturase Location: 485558-485777 bp Feature: domain Description: GIIM Note: maturase Location: 485558-485777 bp Feature: gene Location: 486028-486840 bp Feature: domain Description: YcgQ Location: 486031-486838 bp Feature: domain Description: YcgQ Location: 486031 -486838 bp Feature: gene Location: 486840-487742 bp Feature: domain Description: YraQ Location: 486843-487740 bp Feature: domain Description: YraQ Location: 486843-487740 bp Feature: gene Location: 652483-653472 bp Feature: domain Description: lipoyltrans Location: 652498-653446 bp Feature: domain Description: lipoyltrans Location: 652498-653446 bp Feature: gene Location: 653559-653729 bp Feature: gene Location: 654061-655371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654298-654913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654298-65491 3 bp Feature: domain Description: GIIM Note: maturase Location: 654967-655183 bp Feature: domain Description: GIIM Note: maturase Location: 654967-6551 83 bp Feature: gene Location: 655437-656222 bp Feature: domain Description: COG3442 Location: 655485-656211 bp Feature: domain Description: COG3442 Location: 655485-65621 1 bp Feature: gene Location: 656222-657565 bp Feature: domain Description: MurE Location: 656255-657560 bp Feature: domain Description: MurE Location: 656255-657560 bp Feature: gene Location: 1242106-1242783 bp Feature: domain Description: DUF4956 Location: 1242193-1242556 bp Feature: domain Description: DUF4956 Location: 1 2421 93-1 242556 bp Feature: gene Location: 1242835-1243530 bp Feature: domain Description: PolyPPase_VTC_like Location: 1242853-1243495 bp Feature: domain Description: PolyPPase_VTC_like Location: 1 242853-1 243495 bp Feature: gene Location: 1243899-1245176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1244103-1244718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2441 03-1 24471 8 bp Feature: domain Description: GIIM Note: maturase Location: 1244772-1244988 bp Feature: domain Description: GIIM Note: maturase Location: 1 244772-1 244988 bp Feature: gene Location: 1245752-1247089 bp Feature: domain Description: Branch_AA_trans Location: 1245761-1247045 bp Feature: domain Description: Branch_AA_trans Location: 1 245761 -1 247045 bp Feature: gene Location: 1247285-1249333 bp Feature: domain Description: PRK12267 Location: 1247345-1249328 bp Feature: domain Description: PRK1 2267 Location: 1 247345-1 249328 bp Feature: gene Location: 1294653-1295984 bp Feature: domain Description: MurC Location: 1294662-1295958 bp Feature: domain Description: MurC Location: 1 294662-1 295958 bp Feature: gene Location: 1295994-1296611 bp Feature: gene Location: 1296783-1298060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1296987-1297602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 296987-1 297602 bp Feature: domain Description: GIIM Note: maturase Location: 1297656-1297872 bp Feature: domain Description: GIIM Note: maturase Location: 1 297656-1 297872 bp Feature: gene Location: 1298633-1301731 bp Feature: domain Description: HepA Location: 1300175-1301723 bp Feature: domain Description: HepA Location: 1 3001 75-1 301 723 bp Feature: gene Location: 1301886-1303196 bp Feature: domain Description: Der Location: 1301889-1303194 bp Feature: domain Description: Der Location: 1 301 889-1 3031 94 bp Feature: gene Location: 1720853-1721035 bp Feature: domain Description: rpmF Location: 1720856-1721018 bp Feature: domain Description: rpmF Location: 1 720856-1 721 01 8 bp Feature: gene Location: 1721051-1721200 bp Feature: domain Description: rpmG Location: 1721054-1721198 bp Feature: domain Description: rpmG Location: 1 721 054-1 721 1 98 bp Feature: gene Location: 1721500-1722777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1721704-1722319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 721 704-1 72231 9 bp Feature: domain Description: GIIM Note: maturase Location: 1722373-1722589 bp Feature: domain Description: GIIM Note: maturase Location: 1 722373-1 722589 bp Feature: gene Location: 1723338-1723799 bp Feature: gene Location: 1723804-1726641 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1723906-1724281 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1 723906-1 724281 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1724383-1724686 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1 724383-1 724686 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1724758-1725967 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1 724758-1 725967 bp Feature: domain Description: LPXTG_anchor Location: 1726540-1726633 bp Feature: domain Description: LPXTG_anchor Location: 1 726540-1 726633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT murG (TIGR01133), FtsQ (pfam03799), RVT-GII, GIIM (pfam08388), FtsA (smart00842), PRK09330 (cell division protein FtsZ; Validated), McsA (COG3880), ClpA (TIGR02639), YkuJ (COG4703), HisM (COG0765)
GlnQ (COG1126), TTHA1623-like_MBL-fold (cd16322), PRK08643 ((S)-acetoin forming diacetyl reductase), PRK07246 (bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated), PRK05764 (aspartate aminotransferase; Provisional), Cof (COG0561), PRK10416 (signal recognition particle-docking protein FtsY; Provisional), YcgQ (COG3689), YraQ (COG0701), lipoyltrans (TIGR00545)
COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), MurE (COG0769), DUF4956 (pfam16316), PolyPPase_VTC_like (cd07750), Branch_AA_trans (pfam05525), PRK12267 (methionyl-tRNA synthetase; Reviewed), MurC (COG0773), HepA (COG0553), Der (COG1160), rpmF (PRK12286)
rpmG (PRK00595), Surf_Exclu_PgrA (TIGR04320), LPXTG_anchor (TIGR01167)