myRT

myRT report for GCA_002247505.1_ASM224750v1

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Seq: NQBI01000065.1 Shigella sonnei strain ECH+17 138-HLP180_NODE_108.ctg_1, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2272 bp Neighborhood of RT #1 [93, 2272] RVT-GII GIIM Feature: gene Location: 93-1616 bp Ori: OYI08262.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 371 bp Feature: gene Location: 1687-1995 bp Feature: gene Location: 1910-2272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NQBI01000011.1 Shigella sonnei strain ECH+17 138-HLP180_NODE_44.ctg_1, whole genome shotgun sequence (26981 bp)
Overview 1 RT 1: 24207-26882 bp Neighborhood of RT #1 [24207, 26969] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 24207-25436 bp Ori: OYI12421.1 Feature: domain Description: YesM Location: 24687-25428 bp Feature: domain Description: YesM Location: 2 4687-2 542 8 bp Feature: gene Location: 25509-25697 bp Feature: gene Location: 26019-26540 bp Ori: OYI12419.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26025-26307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 602 5-2 6307 bp Feature: domain Description: GIIM Note: maturase Location: 26355-26535 bp Feature: domain Description: GIIM Note: maturase Location: 2 6355-2 6535 bp Feature: gene Location: 26612-26969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26804-26882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6804-2 6882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: NQBI01000045.1 Shigella sonnei strain ECH+17 138-HLP180_NODE_58.ctg_1, whole genome shotgun sequence (13334 bp)
Overview 1 RT 1: 3668-7293 bp Neighborhood of RT #1 [3668, 7394] RVT_N RVT-GII GIIM HNHc AdoMet_MTases Feature: gene Location: 3668-3904 bp Feature: gene Location: 3831-4025 bp Feature: gene Location: 4807-6474 bp Ori: OYI09888.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4855-5092 bp Feature: domain Description: RVT_N Location: 4855-5092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5143-5785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5143 -5785 bp Feature: domain Description: GIIM Note: maturase Location: 5836-6070 bp Feature: domain Description: GIIM Note: maturase Location: 583 6-6070 bp Feature: domain Description: HNHc Note: nucleases Location: 6280-6439 bp Feature: domain Description: HNHc Note: nucleases Location: 6280-643 9 bp Feature: gene Location: 6452-6850 bp Feature: gene Location: 6831-7394 bp Ori: OYI09889.1 Feature: domain Description: AdoMet_MTases Location: 6993-7293 bp Feature: domain Description: AdoMet_MTases Location: 6993 -7293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AdoMet_MTases (cl17173)

Seq: NQBI01000104.1 Shigella sonnei strain ECH+17 138-HLP180_NODE_7.ctg_1, whole genome shotgun sequence (166108 bp)
Overview 1 RT 1: 22420-28451 bp Neighborhood of RT #1 [22420, 28588] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22420-22560 bp Ori: OYI05725.1 Feature: domain Description: SfsB Location: 22429-22501 bp Feature: domain Description: SfsB Location: 224 29-22501 bp Feature: gene Location: 22557-23027 bp Feature: gene Location: 23374-26583 bp Ori: OYI05727.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23902-24391 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23902-24 391 bp Feature: domain Description: nitrilase Location: 25897-26494 bp Feature: domain Description: nitrilase Location: 25897-264 94 bp Feature: gene Location: 26878-27681 bp Ori: OYI05728.1 Feature: domain Description: AbiEi_3_N Location: 26911-27172 bp Feature: domain Description: AbiEi_3_N Location: 26911-27172 bp Feature: domain Description: AbiEi_3 Location: 27184-27640 bp Feature: domain Description: AbiEi_3 Location: 27184 -2764 0 bp Feature: gene Location: 27668-28588 bp Ori: OYI05729.1 Feature: domain Description: AbiEii Location: 27710-28451 bp Feature: domain Description: AbiEii Location: 27710-284 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: NQBI01000096.1 Shigella sonnei strain ECH+17 138-HLP180_NODE_62.ctg_1, whole genome shotgun sequence (11967 bp)
Overview 1 RT 1: 10092-11929 bp Neighborhood of RT #1 [10092, 11967] Asparaginase_2 RVT-GII RVT-GII Feature: gene Location: 10092-11123 bp Ori: OYI06585.1 Feature: domain Description: Asparaginase_2 Location: 10182-11115 bp Feature: domain Description: Asparaginase_2 Location: 10182-11115 bp Feature: gene Location: 11281-11483 bp Feature: gene Location: 11531-11695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11543-11690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115 43-11690 bp Feature: gene Location: 11647-11967 bp Ori: OYI06586.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11827-11929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11827-11929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII