myRT

myRT report for GCA_002247735.1_ASM224773v1

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Seq: NQBU01000092.1 Escherichia coli strain ECSW+05 NODE_33_length_47685_cov_62.4731_ID_65.ctg_1, whole genome shotgun sequence (47685 bp)
Overview 1 RT 1: 16793-22644 bp Neighborhood of RT #1 [16793, 22646] COG3943 Pox_D5 RVT-Retrons TIR_2 Prim_Zn_Ribbon COG3378 DUF5375 Feature: gene Location: 16793-16939 bp Feature: domain Description: COG3943 Location: 16796-16895 bp Feature: domain Description: COG3943 Location: 1 6796-1 6895 bp Feature: gene Location: 17370-17672 bp Feature: domain Description: Pox_D5 Location: 17463-17646 bp Feature: domain Description: Pox_D5 Location: 1 7463-1 7646 bp Feature: gene Location: 17760-19367 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18051-18648 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 8051 -1 8648 bp Feature: domain Description: TIR_2 Location: 18972-19329 bp Feature: domain Description: TIR_2 Location: 1 8972-1 9329 bp Feature: gene Location: 19978-22311 bp Feature: domain Description: Prim_Zn_Ribbon Location: 20068-20176 bp Feature: domain Description: Prim_Zn_Ribbon Location: 20068-201 76 bp Feature: domain Description: COG3378 Location: 20785-22300 bp Feature: domain Description: COG3378 Location: 20785-22300 bp Feature: gene Location: 22326-22646 bp Feature: domain Description: DUF5375 Location: 22329-22644 bp Feature: domain Description: DUF5375 Location: 22329-22644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), Pox_D5 (pfam03288), RVT-Retrons, TIR_2 (pfam13676), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), DUF5375 (pfam17345)

Seq: NQBU01000070.1 Escherichia coli strain ECSW+05 NODE_128_length_1917_cov_116.756_ID_255.ctg_1, whole genome shotgun sequence (1917 bp)
Overview 1 RT 1: 60-1825 bp Neighborhood of RT #1 [60, 1825] RVT-GII Feature: gene Location: 60-1544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462-1152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462 -1152 bp Feature: gene Location: 1544-1825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII