myRT

myRT report for GCA_002247895.1_ASM224789v1

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Seq: NQCG01000042.1 Klebsiella pneumoniae subsp. pneumoniae strain KPH+03 NODE_28_length_73882_cov_66.9966_ID_55.ctg_1, whole genome shotgun sequence (73882 bp)
Overview 1 RT 1: 62792-70145 bp Neighborhood of RT #1 [62792, 70165] PRK09692 RVT-Retrons Ogr_Delta COG4643 COG5519 Feature: gene Location: 62792-63967 bp Ori: OYJ00992.1 Feature: domain Description: PRK09692 Location: 62801-63953 bp Feature: domain Description: PRK09692 Location: 62801 -63953 bp Feature: gene Location: 63956-65017 bp Feature: gene Location: 65017-66201 bp Ori: OYJ00994.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65167-65746 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 651 67-65746 bp Feature: gene Location: 66923-67195 bp Ori: OYJ00995.1 Feature: domain Description: Ogr_Delta Location: 66947-67082 bp Feature: domain Description: Ogr_Delta Location: 66947-67082 bp Feature: gene Location: 67478-70165 bp Ori: OYJ00996.1 Feature: domain Description: COG4643 Location: 67496-68426 bp Feature: domain Description: COG4643 Location: 67496-68426 bp Feature: domain Description: COG5519 Location: 68492-70145 bp Feature: domain Description: COG551 9 Location: 68492-701 45 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, Ogr_Delta (pfam04606), COG4643 (Uncharacterized domain associated with phage/plasmid primase ), COG5519 (Uncharcterized protein, DUF927 family )

Seq: NQCG01000052.1 Klebsiella pneumoniae subsp. pneumoniae strain KPH+03 NODE_2_length_271740_cov_79.5159_ID_3.ctg_1, whole genome shotgun sequence (271740 bp)
Overview 1 RT 1: 29223-37923 bp Neighborhood of RT #1 [29223, 37940] EAL RVT-UG4 FimD FimC Feature: gene Location: 29223-30237 bp Feature: gene Location: 30441-31827 bp Feature: domain Description: EAL Location: 31086-31356 bp Feature: domain Description: EAL Location: 31086-31356 bp Feature: gene Location: 32505-34535 bp Ori: OYI99846.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 32913-33357 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 32 913-33357 bp Feature: gene Location: 34535-37129 bp Ori: OYI99611.1 Feature: domain Description: FimD Location: 34577-37118 bp Feature: domain Description: FimD Location: 34577-37118 bp Feature: gene Location: 37176-37940 bp Ori: OYI99612.1 Feature: domain Description: FimC Location: 37221-37923 bp Feature: domain Description: FimC Location: 372 2 1-3792 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EAL (smart00052), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: NQCG01000089.1 Klebsiella pneumoniae subsp. pneumoniae strain KPH+03 NODE_67_length_6766_cov_19.5454_ID_133.ctg_1, whole genome shotgun sequence (6766 bp)
Overview 1 RT 1: 4067-6765 bp Neighborhood of RT #1 [4067, 6766] PRK10276 RVT-GII InsA Feature: gene Location: 4067-4498 bp Ori: OYI94602.1 Feature: domain Description: PRK10276 Location: 4118-4481 bp Feature: domain Description: PRK10276 Location: 4118-4481 bp Feature: gene Location: 4656-4907 bp Feature: gene Location: 4907-6391 bp Ori: OYI94604.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5309-5999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 09-5999 bp Feature: gene Location: 6543-6766 bp Ori: OYI94605.1 Feature: domain Description: InsA Location: 6549-6765 bp Feature: domain Description: InsA Location: 6549-6765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677)