myRT

myRT report for GCA_002248045.2_ASM224804v2

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Seq: NQCT02000001.1 Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH02 KPCTRSRTH02_contig_1, whole genome shotgun sequence (5280502 bp)
Overview 1 RT 1: 383058-386997 bp 2 RT 2: 1446458-1450777 bp 3 RT 3: 3134230-3138366 bp Neighborhood of RT #1 [383058, 387205] Psu RVT-UG17 SLATT_5 PRK09692 PRK09692 Neighborhood of RT #2 [1446458, 1450777] TIGR02646 COG3950 RVT-Retrons Neighborhood of RT #3 [3134230, 3138366] umuC PRK10276 RVT-GII Feature: gene Location: 383058-383607 bp Feature: domain Description: Psu Location: 383076-383457 bp Feature: domain Description: Psu Location: 383076-383457 bp Feature: gene Location: 383617-383752 bp Feature: gene Location: 383934-385343 bp Ori: TNJ70838.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 384171-384783 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 3841 71 -384783 bp Feature: gene Location: 385442-386179 bp Ori: TNJ70839.1 Feature: domain Description: SLATT_5 Location: 385541-386144 bp Feature: domain Description: SLATT_5 Location: 385541 -3861 44 bp Feature: gene Location: 386232-387205 bp Feature: domain Description: PRK09692 Location: 386241-386604 bp Feature: domain Description: PRK09692 Location: 386241 -386604 bp Feature: domain Description: PRK09692 Location: 386625-386997 bp Feature: domain Description: PRK09692 Location: 386625-386997 bp Feature: gene Location: 1446458-1447099 bp Ori: TNJ71826.1 Feature: domain Description: TIGR02646 Location: 1446560-1446935 bp Feature: domain Description: TIGR02646 Location: 1 446560-1 446935 bp Feature: gene Location: 1447084-1448676 bp Ori: TNJ71827.1 Feature: domain Description: COG3950 Location: 1447264-1448485 bp Feature: domain Description: COG3950 Location: 1 447264-1 448485 bp Feature: gene Location: 1448654-1449619 bp Ori: TNJ71828.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1448762-1449359 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 448762-1 449359 bp Feature: gene Location: 1450045-1450686 bp Feature: gene Location: 1450688-1450777 bp Feature: gene Location: 3134230-3135495 bp Ori: TNJ73359.1 Feature: domain Description: umuC Location: 3134233-3135493 bp Feature: domain Description: umuC Location: 31 34233-31 35493 bp Feature: gene Location: 3135497-3135916 bp Ori: TNJ73360.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3135500-3135911 bp Feature: domain Description: PRK1 0276 Location: 31 35500-31 3591 1 bp Feature: gene Location: 3135996-3137480 bp Ori: TNJ75417.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3136398-3137088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 36398-31 37088 bp Feature: gene Location: 3137538-3137732 bp Feature: gene Location: 3138277-3138366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG17, SLATT_5 (pfam18160), PRK09692 (Integrase; provisional), TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII