myRT

myRT report for GCA_002248135.1_ASM224813v1

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Seq: NQCZ01000051.1 Klebsiella pneumoniae strain KPCTRSRTH08 NODE_5_length_320814_cov_64.6955_ID_9.ctg_1, whole genome shotgun sequence (320814 bp)
Overview 1 RT 1: 32766-40147 bp Neighborhood of RT #1 [32766, 40164] PRK09692 Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 32766-34004 bp Feature: domain Description: PRK09692 Location: 32772-33954 bp Feature: domain Description: PRK09692 Location: 32772-33954 bp Feature: gene Location: 34231-34690 bp Feature: domain Description: Integrase_1 Location: 34252-34519 bp Feature: domain Description: Integrase_1 Location: 34252-3451 9 bp Feature: gene Location: 34681-36762 bp Ori: OYJ99152.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 35092-35536 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 35092-35536 bp Feature: gene Location: 36759-39353 bp Ori: OYJ99153.1 Feature: domain Description: FimD Location: 36801-39342 bp Feature: domain Description: FimD Location: 36801 -39342 bp Feature: gene Location: 39400-40164 bp Ori: OYJ99154.1 Feature: domain Description: FimC Location: 39445-40147 bp Feature: domain Description: FimC Location: 39445-401 47 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: NQCZ01000067.1 Klebsiella pneumoniae strain KPCTRSRTH08 NODE_21_length_88778_cov_65.8543_ID_41.ctg_1, whole genome shotgun sequence (88778 bp)
Overview 1 RT 1: 68000-77612 bp Neighborhood of RT #1 [68000, 77728] COG2958 AAA_15 AAA_15 RVT-Retrons COG0610 AAA_13 AAA_13 Feature: gene Location: 68000-68932 bp Ori: OYJ96683.1 Feature: domain Description: COG2958 Location: 68018-68912 bp Feature: domain Description: COG2 958 Location: 68018-68912 bp Feature: gene Location: 69506-71623 bp Ori: OYJ96700.1 Feature: domain Description: AAA_15 Location: 69509-69926 bp Feature: domain Description: AAA_15 Location: 69509-6992 6 bp Feature: domain Description: AAA_15 Location: 70064-70490 bp Feature: domain Description: AAA_15 Location: 70064-70490 bp Feature: gene Location: 71796-72896 bp Ori: OYJ96684.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71937-72498 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71937-72 498 bp Feature: gene Location: 73438-76557 bp Ori: OYJ96685.1 Feature: domain Description: COG0610 Location: 73522-76534 bp Feature: domain Description: COG0610 Location: 7352 2 -76534 bp Feature: gene Location: 76550-77728 bp Ori: OYJ96686.1 Feature: domain Description: AAA_13 Location: 76643-76817 bp Feature: domain Description: AAA_13 Location: 76643-76817 bp Feature: domain Description: AAA_13 Location: 77039-77612 bp Feature: domain Description: AAA_13 Location: 77039-77612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2958 (Uncharacterized protein ), AAA_15 (pfam13175), RVT-Retrons, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), AAA_13 (pfam13166)

Seq: NQCZ01000084.1 Klebsiella pneumoniae strain KPCTRSRTH08 NODE_52_length_7716_cov_18.1321_ID_103.ctg_1, whole genome shotgun sequence (7716 bp)
Overview 1 RT 1: 240-6650 bp Neighborhood of RT #1 [240, 6667] RVT-GII PRK15235 PRK15233 Feature: gene Location: 240-1703 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 621-1311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 621-13 11 bp Feature: gene Location: 3443-5890 bp Ori: OYJ95318.1 Feature: domain Description: PRK15235 Location: 3449-5888 bp Feature: domain Description: PRK1523 5 Location: 3 449-5888 bp Feature: gene Location: 5906-6667 bp Ori: OYJ95319.1 Feature: domain Description: PRK15233 Location: 5957-6650 bp Feature: domain Description: PRK1523 3 Location: 5957-6650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK15235 (outer membrane fimbrial usher protein SefC; Provisional), PRK15233 (fimbrial chaperone SefB)