myRT

myRT report for GCA_002248245.1_ASM224824v1

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Seq: NQDL01000044.1 Shigella boydii strain ECH+23 NODE_71_length_6438_cov_41.3305_ID_141.ctg_1, whole genome shotgun sequence (6438 bp)
Overview 1 RT 1: 4186-6416 bp Neighborhood of RT #1 [4186, 6438] RVT-GII DDE_Tnp_IS1 Feature: gene Location: 4186-4554 bp Feature: gene Location: 5084-5761 bp Feature: gene Location: 6016-6330 bp Ori: OYK78484.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6136-6238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 36-6238 bp Feature: gene Location: 6332-6438 bp Feature: domain Description: DDE_Tnp_IS1 Location: 6335-6416 bp Feature: domain Description: DDE_Tnp_IS1 Location: 6335-641 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS1 (pfam03400)

Seq: NQDL01000043.1 Shigella boydii strain ECH+23 NODE_107_length_2272_cov_176.809_ID_213.ctg_1, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 278-586 bp Feature: gene Location: 657-2180 bp Ori: OYK78486.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NQDL01000124.1 Shigella boydii strain ECH+23 NODE_10_length_166108_cov_72.8525_ID_19.ctg_1, whole genome shotgun sequence (166108 bp)
Overview 1 RT 1: 137521-143630 bp Neighborhood of RT #1 [137521, 143689] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Feature: gene Location: 137521-138441 bp Ori: OYK71495.1 Feature: domain Description: AbiEii Location: 137563-138304 bp Feature: domain Description: AbiEii Location: 13 7563 -13 83 04 bp Feature: gene Location: 138428-139231 bp Ori: OYK71496.1 Feature: domain Description: AbiEi_3_N Location: 138461-138722 bp Feature: domain Description: AbiEi_3 _N Location: 13 8461-13 8722 bp Feature: domain Description: AbiEi_3 Location: 138734-139190 bp Feature: domain Description: AbiEi_3 Location: 13 873 4-13 9190 bp Feature: gene Location: 139526-142735 bp Ori: OYK71497.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 140054-140543 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 140054-140543 bp Feature: domain Description: nitrilase Location: 142049-142646 bp Feature: domain Description: nitrilase Location: 142049-142646 bp Feature: gene Location: 143082-143552 bp Feature: gene Location: 143549-143689 bp Ori: OYK71499.1 Feature: domain Description: SfsB Location: 143558-143630 bp Feature: domain Description: SfsB Location: 143 558-143 63 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423)

Seq: NQDL01000116.1 Shigella boydii strain ECH+23 NODE_2_length_397124_cov_78.6554_ID_3.ctg_1, whole genome shotgun sequence (397125 bp)
Overview 1 RT 1: 24621-28970 bp Neighborhood of RT #1 [24621, 28978] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 24621-25526 bp Feature: gene Location: 25500-25787 bp Feature: gene Location: 26012-26551 bp Ori: OYK73554.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26342-26420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2634 2-264 20 bp Feature: gene Location: 26579-27100 bp Ori: OYK73555.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26585-26867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26585-26867 bp Feature: domain Description: GIIM Note: maturase Location: 26915-27095 bp Feature: domain Description: GIIM Note: maturase Location: 26915-27095 bp Feature: gene Location: 27199-27378 bp Feature: gene Location: 27749-28978 bp Ori: OYK73557.1 Feature: domain Description: YesM Location: 28229-28970 bp Feature: domain Description: YesM Location: 28229-28970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)