myRT

myRT report for GCA_002248255.1_ASM224825v1

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Seq: NQDM01000052.1 Escherichia coli strain ECPUTH02 NODE_15_length_148966_cov_59.736_ID_29.ctg_1, whole genome shotgun sequence (148966 bp)
Overview 1 RT 1: 79496-84394 bp Neighborhood of RT #1 [79496, 84394] RVT-Retrons Feature: gene Location: 79496-79726 bp Feature: gene Location: 79941-80180 bp Feature: gene Location: 80751-82508 bp Ori: OYK41858.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 80895-81513 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 80895-81 51 3 bp Feature: gene Location: 82755-83882 bp Feature: gene Location: 83879-84394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: NQDM01000094.1 Escherichia coli strain ECPUTH02 NODE_49_length_11463_cov_54.3051_ID_97.ctg_1, whole genome shotgun sequence (11463 bp)
Overview 1 RT 1: 76-4005 bp Neighborhood of RT #1 [76, 4005] Macro_Appr_pase Caudo_TAP RVT-UG17 SLATT_5 Feature: gene Location: 76-978 bp Ori: OYK36845.1 Feature: domain Description: Macro_Appr_pase Location: 94-607 bp Feature: domain Description: Macro_Appr_pase Location: 94-607 bp Feature: gene Location: 987-1571 bp Ori: OYK36846.1 Feature: domain Description: Caudo_TAP Location: 1203-1560 bp Feature: domain Description: Caudo_TAP Location: 12 03-1560 bp Feature: gene Location: 1684-3054 bp Ori: OYK36847.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1912-2518 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1912 -2 518 bp Feature: gene Location: 3032-3583 bp Ori: OYK36848.1 Feature: domain Description: SLATT_5 Location: 3041-3554 bp Feature: domain Description: SLATT_5 Location: 3041-3554 bp Feature: gene Location: 3828-4005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Macro_Appr_pase (cd02900), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160)

Seq: NQDM01000062.1 Escherichia coli strain ECPUTH02 NODE_38_length_24688_cov_20.2527_ID_75.ctg_1, whole genome shotgun sequence (24688 bp)
Overview 1 RT 1: 1717-5684 bp Neighborhood of RT #1 [1717, 5684] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1717-1950 bp Ori: OYK40184.1 Feature: domain Description: DUF905 Location: 1747-1945 bp Feature: domain Description: DUF905 Location: 1747-1945 bp Feature: gene Location: 2018-2515 bp Ori: OYK40185.1 Feature: domain Description: PRK13732 Location: 2021-2513 bp Feature: domain Description: PRK13 73 2 Location: 2021-2513 bp Feature: gene Location: 2665-4566 bp Ori: OYK40186.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2932-3763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293 2-3 763 bp Feature: domain Description: Intron_maturas2 Location: 3877-4135 bp Feature: domain Description: Intron_maturas2 Location: 3 877-413 5 bp Feature: domain Description: HNHc Note: nucleases Location: 4309-4471 bp Feature: domain Description: HNHc Note: nucleases Location: 43 09-4471 bp Feature: gene Location: 5244-5450 bp Feature: gene Location: 5452-5684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NQDM01000086.1 Escherichia coli strain ECPUTH02 NODE_66_length_4156_cov_31.5335_ID_131.ctg_1, whole genome shotgun sequence (4156 bp)
Overview 1 RT 1: 1-2662 bp Neighborhood of RT #1 [1, 2662] PHA02517 RVT-GII GIIM Feature: gene Location: 1-384 bp Feature: domain Description: PHA02517 Location: 7-385 bp Feature: domain Description: PHA02517 Location: 7-385 bp Feature: gene Location: 474-1997 bp Ori: OYK37597.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747-1479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 7-14 79 bp Feature: domain Description: GIIM Note: maturase Location: 1554-1752 bp Feature: domain Description: GIIM Note: maturase Location: 1554 -1752 bp Feature: gene Location: 2068-2376 bp Feature: gene Location: 2291-2662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)