myRT

myRT report for GCA_002248265.1_ASM224826v1

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Seq: NQDO01000124.1 Escherichia coli strain ECPUTH04 147-ESBL-SIUE-4_NODE_105.ctg_1, whole genome shotgun sequence (985 bp)
Overview 1 RT 1: 1-984 bp Neighborhood of RT #1 [1, 985] RVT-GII Feature: gene Location: 1-363 bp Feature: gene Location: 278-586 bp Feature: gene Location: 657-985 bp Ori: OYK37595.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NQDO01000078.1 Escherichia coli strain ECPUTH04 147-ESBL-SIUE-4_NODE_50.ctg_1, whole genome shotgun sequence (11739 bp)
Overview 1 RT 1: 5566-8528 bp Neighborhood of RT #1 [5566, 11094] HEPN_Apea GerD RVT-UG1 Feature: gene Location: 5566-6666 bp Ori: OYK43634.1 Feature: domain Description: HEPN_Apea Location: 5635-5950 bp Feature: domain Description: HEPN_Apea Location: 5635-5950 bp Feature: gene Location: 6963-7397 bp Ori: OYK43635.1 Feature: domain Description: GerD Location: 7041-7155 bp Feature: domain Description: GerD Location: 7041-7155 bp Feature: gene Location: 7406-11094 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 8018-8528 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 8018-852 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEPN_Apea (pfam18739), GerD (pfam17898), RVT-UG1

Seq: NQDO01000086.1 Escherichia coli strain ECPUTH04 147-ESBL-SIUE-4_NODE_77.ctg_1, whole genome shotgun sequence (2571 bp)
Overview 1 RT 1: 239-2326 bp Neighborhood of RT #1 [239, 2571] PHA02517 RVT-GII GIIM Feature: gene Location: 239-526 bp Feature: gene Location: 737-1210 bp Feature: domain Description: PHA02517 Location: 743-1208 bp Feature: domain Description: PHA02517 Location: 743 -1208 bp Feature: gene Location: 1300-2571 bp Ori: OYK41749.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1321-2053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 21-2053 bp Feature: domain Description: GIIM Note: maturase Location: 2128-2326 bp Feature: domain Description: GIIM Note: maturase Location: 2128-23 26 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NQDO01000100.1 Escherichia coli strain ECPUTH04 147-ESBL-SIUE-4_NODE_58.ctg_1, whole genome shotgun sequence (7603 bp)
Overview 1 RT 1: 5606-7554 bp Neighborhood of RT #1 [5606, 7603] RAYT IS285 RVT-GII RVT-GII InsE Feature: gene Location: 5606-5728 bp Feature: domain Description: RAYT Location: 5609-5729 bp Feature: domain Description: RAYT Location: 5609-5729 bp Feature: gene Location: 5736-6403 bp Feature: domain Description: IS285 Location: 5766-6144 bp Feature: domain Description: IS285 Location: 5766-614 4 bp Feature: gene Location: 6558-6933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6561-6687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6561-6687 bp Feature: gene Location: 6933-7182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6936-7182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6936-7182 bp Feature: gene Location: 7263-7603 bp Feature: domain Description: InsE Location: 7266-7554 bp Feature: domain Description: InsE Location: 7266-7554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), IS285 (COG3328), RVT-GII, InsE (COG2963)