myRT

myRT report for GCA_002248905.1_ASM224890v1

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Seq: NQCM01000047.1 Escherichia coli strain ECH+07 128-HLP33_NODE_15.ctg_1, whole genome shotgun sequence (149346 bp)
Overview 1 RT 1: 79876-84774 bp Neighborhood of RT #1 [79876, 84774] RVT-Retrons Feature: gene Location: 79876-80106 bp Feature: gene Location: 80321-80560 bp Feature: gene Location: 81131-82888 bp Ori: OYJ61360.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81275-81893 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81 275-81 893 bp Feature: gene Location: 83135-84262 bp Feature: gene Location: 84259-84774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: NQCM01000109.1 Escherichia coli strain ECH+07 128-HLP33_NODE_46.ctg_1, whole genome shotgun sequence (13073 bp)
Overview 1 RT 1: 7459-11017 bp Neighborhood of RT #1 [7459, 11388] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 7459-7636 bp Feature: gene Location: 7881-8432 bp Ori: OYJ53018.1 Feature: domain Description: SLATT_5 Location: 7890-8403 bp Feature: domain Description: SLATT_5 Location: 7890-8403 bp Feature: gene Location: 8410-9780 bp Ori: OYJ53019.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8638-9244 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8638-92 44 bp Feature: gene Location: 9893-10477 bp Ori: OYJ53020.1 Feature: domain Description: Caudo_TAP Location: 10109-10466 bp Feature: domain Description: Caudo_TAP Location: 10109-10466 bp Feature: gene Location: 10486-11388 bp Ori: OYJ53021.1 Feature: domain Description: Macro_Appr_pase Location: 10504-11017 bp Feature: domain Description: Macro_Appr_pase Location: 10504-11017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: NQCM01000036.1 Escherichia coli strain ECH+07 128-HLP33_NODE_37.ctg_1, whole genome shotgun sequence (24439 bp)
Overview 1 RT 1: 20745-24347 bp Neighborhood of RT #1 [20745, 24347] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 20745-21005 bp Ori: OYJ62694.1 Feature: domain Description: DUF905 Location: 20802-21000 bp Feature: domain Description: DUF905 Location: 20802-21000 bp Feature: gene Location: 21036-21521 bp Ori: OYJ62695.1 Feature: domain Description: PRK13732 Location: 21039-21519 bp Feature: domain Description: PRK13 73 2 Location: 2103 9-21519 bp Feature: gene Location: 21671-23572 bp Ori: OYJ62696.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21938-22769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2193 8-22769 bp Feature: domain Description: Intron_maturas2 Location: 22883-23141 bp Feature: domain Description: Intron_maturas2 Location: 22883 -23 141 bp Feature: domain Description: HNHc Note: nucleases Location: 23315-23477 bp Feature: domain Description: HNHc Note: nucleases Location: 23 3 15-23 477 bp Feature: gene Location: 24135-24347 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)