myRT

myRT report for GCA_002248955.2_ASM224895v2

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Seq: NQDA02000001.1 Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH09 KPCTRSRTH09_contig_1, whole genome shotgun sequence (5241953 bp)
Overview 1 RT 1: 767438-774786 bp 2 RT 2: 3113600-3116431 bp Neighborhood of RT #1 [767438, 774836] FimC FimD RVT-UG4 Integrase_1 PRK09692 Neighborhood of RT #2 [3113600, 3116442] PRK10276 RVT-GII DinI Feature: gene Location: 767438-768202 bp Ori: TNJ84776.1 Feature: domain Description: FimC Location: 767483-768185 bp Feature: domain Description: FimC Location: 767483-7681 85 bp Feature: gene Location: 768249-770843 bp Ori: TNJ88750.1 Feature: domain Description: FimD Location: 768291-770832 bp Feature: domain Description: FimD Location: 768291 -770832 bp Feature: gene Location: 770840-772921 bp Ori: TNJ84777.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 771251-771695 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 771 251 -771 695 bp Feature: gene Location: 772963-773418 bp Ori: TNJ84778.1 Feature: domain Description: Integrase_1 Location: 772966-773200 bp Feature: domain Description: Integrase_1 Location: 772966-773200 bp Feature: gene Location: 773598-774836 bp Feature: domain Description: PRK09692 Location: 773604-774786 bp Feature: domain Description: PRK09692 Location: 773604-774786 bp Feature: gene Location: 3113600-3114019 bp Ori: TNJ86895.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3113603-3114014 bp Feature: domain Description: PRK1 0276 Location: 31 1 3603-31 1 401 4 bp Feature: gene Location: 3113997-3114182 bp Feature: gene Location: 3114098-3115582 bp Ori: TNJ88858.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3114500-3115190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 4500-31 1 51 90 bp Feature: gene Location: 3115582-3115833 bp Feature: gene Location: 3116200-3116442 bp Ori: TNJ86898.1 Feature: domain Description: DinI Location: 3116251-3116431 bp Feature: domain Description: DinI Location: 31 1 6251 -31 1 6431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), PRK09692 (Integrase; provisional), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DinI (pfam06183)