myRT

myRT report for GCA_002249025.1_ASM224902v1

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Seq: NQDR01000030.1 Shigella sonnei strain ECPUTH07 NODE_22_length_75129_cov_83.9873_ID_43.ctg_1, whole genome shotgun sequence (75129 bp)
Overview 1 RT 1: 21909-25789 bp Neighborhood of RT #1 [21909, 25794] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 21909-22625 bp Ori: OYK60347.1 Feature: domain Description: rph Location: 21912-22620 bp Feature: domain Description: rph Location: 21 91 2-22620 bp Feature: gene Location: 22692-23333 bp Ori: OYK60348.1 Feature: domain Description: pyrE Location: 22695-23328 bp Feature: domain Description: pyrE Location: 22695-23328 bp Feature: gene Location: 23631-24590 bp Ori: OYK60349.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23766-24315 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23766-2431 5 bp Feature: gene Location: 24636-25232 bp Ori: OYK60350.1 Feature: domain Description: slmA Location: 24642-25218 bp Feature: domain Description: slmA Location: 24642-2521 8 bp Feature: gene Location: 25339-25794 bp Ori: OYK60400.1 Feature: domain Description: dut Location: 25342-25789 bp Feature: domain Description: dut Location: 25342-25789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NQDR01000037.1 Shigella sonnei strain ECPUTH07 NODE_50_length_19688_cov_82.0532_ID_99.ctg_1, whole genome shotgun sequence (19688 bp)
Overview 1 RT 1: 1-3662 bp Neighborhood of RT #1 [1, 3667] RVT-UG17 SLATT_5 PRK10597 Feature: gene Location: 1-859 bp Feature: gene Location: 982-1197 bp Feature: gene Location: 1297-2667 bp Ori: OYK59600.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1525-2131 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 152 5-2 131 bp Feature: gene Location: 2645-3196 bp Ori: OYK59601.1 Feature: domain Description: SLATT_5 Location: 2651-3167 bp Feature: domain Description: SLATT_5 Location: 2 651-3167 bp Feature: gene Location: 3419-3667 bp Ori: OYK59602.1 Feature: domain Description: PRK10597 Location: 3422-3662 bp Feature: domain Description: PRK10597 Location: 342 2 -3662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160), PRK10597 (DNA damage-inducible protein I; Provisional)