myRT

myRT report for GCA_002249045.1_ASM224904v1

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Seq: NQDX01000066.1 Shigella boydii strain ECPSTH05 156-ESBL-SIPE-6_NODE_22.ctg_1, whole genome shotgun sequence (61914 bp)
Overview 1 RT 1: 33540-38880 bp Neighborhood of RT #1 [33540, 38903] RVT-GII RVT-GII GIIM YesM YesN YesN Feature: gene Location: 33540-34445 bp Feature: gene Location: 34419-34706 bp Feature: gene Location: 34931-35470 bp Ori: OYL47075.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35261-35339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35261 -35339 bp Feature: gene Location: 35498-36019 bp Ori: OYL47076.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35504-35786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35504-35786 bp Feature: domain Description: GIIM Note: maturase Location: 35834-36014 bp Feature: domain Description: GIIM Note: maturase Location: 35834-3601 4 bp Feature: gene Location: 36602-37831 bp Ori: OYL47077.1 Feature: domain Description: YesM Location: 37082-37823 bp Feature: domain Description: YesM Location: 37082-37823 bp Feature: gene Location: 37848-38903 bp Ori: OYL47078.1 Feature: domain Description: YesN Location: 37851-38241 bp Feature: domain Description: YesN Location: 37851 -38241 bp Feature: domain Description: YesN Location: 38583-38880 bp Feature: domain Description: YesN Location: 38583-38880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972), YesN (COG4753)

Seq: NQDX01000085.1 Shigella boydii strain ECPSTH05 156-ESBL-SIPE-6_NODE_4.ctg_1, whole genome shotgun sequence (282709 bp)
Overview 1 RT 1: 125218-129804 bp Neighborhood of RT #1 [125218, 129804] Q FRG RVT-Retrons HTH_XRE Feature: gene Location: 125218-126252 bp Ori: OYL46001.1 Feature: domain Description: Q Location: 125221-126244 bp Feature: domain Description: Q Location: 12 52 2 1-12 62 44 bp Feature: gene Location: 126765-128129 bp Ori: OYL46002.1 Feature: domain Description: FRG Location: 127332-127617 bp Feature: domain Description: FRG Location: 12 7332 -12 7617 bp Feature: gene Location: 128238-129188 bp Ori: OYL46003.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 128418-128961 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 8418-12 8961 bp Feature: gene Location: 129154-129474 bp Ori: OYL46004.1 Feature: domain Description: HTH_XRE Location: 129169-129328 bp Feature: domain Description: HTH_XRE Location: 12 9169-12 932 8 bp Feature: gene Location: 129511-129804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), FRG (smart00901), RVT-Retrons, HTH_XRE (smart00530)

Seq: NQDX01000041.1 Shigella boydii strain ECPSTH05 156-ESBL-SIPE-6_NODE_47.ctg_1, whole genome shotgun sequence (27964 bp)
Overview 1 RT 1: 5648-8742 bp Neighborhood of RT #1 [5648, 8742] PHA02517 RVT-GII GIIM Feature: gene Location: 5648-5950 bp Feature: gene Location: 5991-6464 bp Feature: domain Description: PHA02517 Location: 5997-6462 bp Feature: domain Description: PHA02517 Location: 5997-6462 bp Feature: gene Location: 6554-8077 bp Ori: OYL48311.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6827-7559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6827-7559 bp Feature: domain Description: GIIM Note: maturase Location: 7634-7832 bp Feature: domain Description: GIIM Note: maturase Location: 763 4-783 2 bp Feature: gene Location: 8148-8456 bp Feature: gene Location: 8371-8742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NQDX01000010.1 Shigella boydii strain ECPSTH05 156-ESBL-SIPE-6_NODE_45.ctg_1, whole genome shotgun sequence (29259 bp)
Overview 1 RT 1: 92-4005 bp Neighborhood of RT #1 [92, 4010] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 92-280 bp Feature: gene Location: 282-488 bp Feature: gene Location: 1166-3067 bp Ori: OYL50955.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1433-2264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 33-2264 bp Feature: domain Description: Intron_maturas2 Location: 2378-2636 bp Feature: domain Description: Intron_maturas2 Location: 2378-2636 bp Feature: domain Description: HNHc Note: nucleases Location: 2810-2972 bp Feature: domain Description: HNHc Note: nucleases Location: 2810-2972 bp Feature: gene Location: 3217-3714 bp Ori: OYL50956.1 Feature: domain Description: PRK13732 Location: 3220-3712 bp Feature: domain Description: PRK13732 Location: 3220-3712 bp Feature: gene Location: 3777-4010 bp Ori: OYL50957.1 Feature: domain Description: DUF905 Location: 3807-4005 bp Feature: domain Description: DUF905 Location: 3807-4 005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: NQDX01000127.1 Shigella boydii strain ECPSTH05 156-ESBL-SIPE-6_NODE_30.ctg_1, whole genome shotgun sequence (49928 bp)
Overview 1 RT 1: 21400-27509 bp Neighborhood of RT #1 [21400, 27568] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Feature: gene Location: 21400-22320 bp Ori: OYL43702.1 Feature: domain Description: AbiEii Location: 21442-22183 bp Feature: domain Description: AbiEii Location: 21442-22183 bp Feature: gene Location: 22307-23110 bp Ori: OYL43703.1 Feature: domain Description: AbiEi_3_N Location: 22340-22601 bp Feature: domain Description: AbiEi_3_N Location: 22340-22601 bp Feature: domain Description: AbiEi_3 Location: 22613-23069 bp Feature: domain Description: AbiEi_3 Location: 22613-23069 bp Feature: gene Location: 23405-26614 bp Ori: OYL43704.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23933-24422 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23933-24422 bp Feature: domain Description: nitrilase Location: 25928-26525 bp Feature: domain Description: nitrilase Location: 25 928-265 25 bp Feature: gene Location: 26961-27431 bp Feature: gene Location: 27428-27568 bp Ori: OYL43706.1 Feature: domain Description: SfsB Location: 27437-27509 bp Feature: domain Description: SfsB Location: 27437-275 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423)