myRT

myRT report for GCA_002249075.1_ASM224907v1

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Seq: NQDY01000031.1 Shigella sonnei strain ECPSTH06 157-ESBL-SIPE-9_NODE_64.ctg_1, whole genome shotgun sequence (2881 bp)
Overview 1 RT 1: 1-2140 bp Neighborhood of RT #1 [1, 2178] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1-1272 bp Ori: OYL57251.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-754 bp Feature: domain Description: GIIM Note: maturase Location: 829-1027 bp Feature: domain Description: GIIM Note: maturase Location: 829-1 027 bp Feature: gene Location: 1362-1745 bp Feature: domain Description: PHA02517 Location: 1368-1701 bp Feature: domain Description: PHA0251 7 Location: 1 368-1 701 bp Feature: gene Location: 1774-2178 bp Ori: OYL57252.1 Feature: domain Description: InsE Location: 1804-2140 bp Feature: domain Description: InsE Location: 1 804-21 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: NQDY01000019.1 Shigella sonnei strain ECPSTH06 157-ESBL-SIPE-9_NODE_2.ctg_1, whole genome shotgun sequence (423395 bp)
Overview 1 RT 1: 21646-28050 bp Neighborhood of RT #1 [21646, 28050] Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 21646-21924 bp Feature: gene Location: 22296-22790 bp Ori: OYL59781.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 22440-22614 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2 2 440-2 2 614 bp Feature: gene Location: 23446-24546 bp Ori: OYL59400.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23626-24160 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 362 6-2 4160 bp Feature: gene Location: 24661-26937 bp Ori: OYL59401.1 Feature: domain Description: AAA_15 Location: 24694-25702 bp Feature: domain Description: AAA_15 Location: 2 4694-2 5702 bp Feature: gene Location: 27820-28050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175)

Seq: NQDY01000076.1 Shigella sonnei strain ECPSTH06 157-ESBL-SIPE-9_NODE_72.ctg_1, whole genome shotgun sequence (1678 bp)
Overview 1 RT 1: 1-994 bp Neighborhood of RT #1 [1, 994] RVT-GII Feature: gene Location: 1-329 bp Ori: OYL54079.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274-328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274-3 28 bp Feature: gene Location: 400-708 bp Feature: gene Location: 623-994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NQDY01000039.1 Shigella sonnei strain ECPSTH06 157-ESBL-SIPE-9_NODE_15.ctg_1, whole genome shotgun sequence (112156 bp)
Overview 1 RT 1: 22420-28451 bp Neighborhood of RT #1 [22420, 28588] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22420-22560 bp Ori: OYL56662.1 Feature: domain Description: SfsB Location: 22429-22501 bp Feature: domain Description: SfsB Location: 224 29-22501 bp Feature: gene Location: 22557-23027 bp Feature: gene Location: 23374-26583 bp Ori: OYL56664.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23902-24391 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23902-24 391 bp Feature: domain Description: nitrilase Location: 25897-26494 bp Feature: domain Description: nitrilase Location: 25897-264 94 bp Feature: gene Location: 26878-27681 bp Ori: OYL56665.1 Feature: domain Description: AbiEi_3_N Location: 26911-27172 bp Feature: domain Description: AbiEi_3_N Location: 26911-27172 bp Feature: domain Description: AbiEi_3 Location: 27184-27640 bp Feature: domain Description: AbiEi_3 Location: 27184 -2764 0 bp Feature: gene Location: 27668-28588 bp Ori: OYL56666.1 Feature: domain Description: AbiEii Location: 27710-28451 bp Feature: domain Description: AbiEii Location: 27710-284 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)