myRT

myRT report for GCA_002250175.1_ASM225017v1

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Seq: NCAC01000139.1 Escherichia coli strain IBUN9016YEC contig_155, whole genome shotgun sequence (11183 bp)
Overview 1 RT 1: 6793-10329 bp Neighborhood of RT #1 [6793, 10981] PRK09678 RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 6793-7065 bp Feature: domain Description: PRK09678 Location: 6802-6958 bp Feature: domain Description: PRK09678 Location: 6802-6958 bp Feature: gene Location: 7711-8679 bp Feature: gene Location: 8681-9613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8783-9377 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8783-9377 bp Feature: gene Location: 10068-10981 bp Feature: domain Description: Arm-DNA-bind_3 Location: 10077-10329 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 0077-1 0329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons

Seq: NCAC01000046.1 Escherichia coli strain IBUN9016YEC contig_51, whole genome shotgun sequence (16262 bp)
Overview 1 RT 1: 10033-14015 bp Neighborhood of RT #1 [10033, 14041] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 10033-11055 bp Feature: domain Description: Asparaginase_2 Location: 10114-11047 bp Feature: domain Description: Asparaginase_2 Location: 10114-11047 bp Feature: gene Location: 11222-11424 bp Feature: gene Location: 11472-12034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11778-11880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11778-11880 bp Feature: gene Location: 12400-12627 bp Feature: gene Location: 12680-14041 bp Feature: domain Description: DcuC Location: 12683-14015 bp Feature: domain Description: DcuC Location: 12 683-14015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)

Seq: NCAC01000164.1 Escherichia coli strain IBUN9016YEC contig_185, whole genome shotgun sequence (6898 bp)
Overview 1 RT 1: 1346-5402 bp Neighborhood of RT #1 [1346, 6637] Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 1346-1624 bp Feature: gene Location: 1996-2490 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2140-2314 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2140-23 14 bp Feature: gene Location: 3146-4246 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3329-3857 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 3 29-3 857 bp Feature: gene Location: 4361-6637 bp Feature: domain Description: AAA_15 Location: 4394-5402 bp Feature: domain Description: AAA_15 Location: 43 94-5402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175)

Seq: NCAC01000154.1 Escherichia coli strain IBUN9016YEC contig_172, whole genome shotgun sequence (2263 bp)
Overview 1 RT 1: 93-2263 bp Neighborhood of RT #1 [93, 2263] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1570-1995 bp Feature: gene Location: 1910-2263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)