myRT

myRT report for GCA_002251225.2_ASM225122v2

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Seq: NOKA02000093.1 Lachnotalea glycerini strain CCRI-19302 NODE_93_length_10266_cov_460.86, whole genome shotgun sequence (10266 bp)
Overview 1 RT 1: 3508-9996 bp Neighborhood of RT #1 [3508, 10151] BaeS RVT-GII INT_RitB_C_like Phage_int_SAM_4 INT_RitA_C_like RVT-GII GIIM Feature: gene Location: 3508-4532 bp Feature: domain Description: BaeS Location: 3631-4090 bp Feature: domain Description: BaeS Location: 3631 -4090 bp Feature: gene Location: 5020-5133 bp Feature: gene Location: 5275-6021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5629-6010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5629-601 0 bp Feature: gene Location: 6132-7141 bp Feature: gene Location: 7128-8108 bp Feature: domain Description: INT_RitB_C_like Location: 7464-8043 bp Feature: domain Description: INT_RitB_C_like Location: 7464-8043 bp Feature: gene Location: 8101-9336 bp Feature: domain Description: Phage_int_SAM_4 Location: 8455-8686 bp Feature: domain Description: Phage_int_SAM_4 Location: 8455-8686 bp Feature: domain Description: INT_RitA_C_like Location: 8770-9301 bp Feature: domain Description: INT_RitA_C_like Location: 8770-9301 bp Feature: gene Location: 9507-10151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9510-9720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 0-9720 bp Feature: domain Description: GIIM Note: maturase Location: 9771-9996 bp Feature: domain Description: GIIM Note: maturase Location: 9771 -9996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), RVT-GII, INT_RitB_C_like (cd00797), Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188), GIIM (pfam08388)

Seq: NOKA02000023.1 Lachnotalea glycerini strain CCRI-19302 NODE_23_length_56425_cov_492.31, whole genome shotgun sequence (56425 bp)
Overview 1 RT 1: 1061-5907 bp Neighborhood of RT #1 [1061, 5907] GntR ipk RVT-GII DUF3794 DUF3794 DUF3794 LysM Feature: gene Location: 1061-1735 bp Feature: domain Description: GntR Location: 1103-1730 bp Feature: domain Description: GntR Location: 1103-1730 bp Feature: gene Location: 1742-2614 bp Feature: domain Description: ipk Location: 1751-2606 bp Feature: domain Description: ipk Location: 1751-2 606 bp Feature: gene Location: 3035-3580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3074-3383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3074-3383 bp Feature: gene Location: 3871-5427 bp Feature: domain Description: DUF3794 Location: 3976-4222 bp Feature: domain Description: DUF3794 Location: 3976-42 2 2 bp Feature: domain Description: DUF3794 Location: 4432-4669 bp Feature: domain Description: DUF3794 Location: 4432 -4669 bp Feature: domain Description: DUF3794 Location: 4903-5146 bp Feature: domain Description: DUF3794 Location: 4903-5146 bp Feature: domain Description: LysM Location: 5290-5413 bp Feature: domain Description: LysM Location: 52 90-5413 bp Feature: gene Location: 5641-5907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GntR (pfam00392), ipk (PRK00343), RVT-GII, DUF3794 (pfam12673), LysM (smart00257)

Seq: NOKA02000001.1 Lachnotalea glycerini strain CCRI-19302 NODE_1_length_439983_cov_315.725, whole genome shotgun sequence (439983 bp)
Overview 1 RT 1: 418303-425768 bp Neighborhood of RT #1 [418303, 425768] MFS_SV2_like Zn_ADH4 RVT-GII GIIM PRK15098 Feature: gene Location: 418303-419676 bp Feature: domain Description: MFS_SV2_like Location: 418405-419620 bp Feature: domain Description: MFS_SV2_like Location: 418405-419620 bp Feature: gene Location: 419815-420888 bp Feature: domain Description: Zn_ADH4 Location: 419821-420769 bp Feature: domain Description: Zn_ADH4 Location: 419821-420769 bp Feature: gene Location: 421213-422517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421414-422032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421414-42203 2 bp Feature: domain Description: GIIM Note: maturase Location: 422089-422296 bp Feature: domain Description: GIIM Note: maturase Location: 422089-422296 bp Feature: gene Location: 423198-425264 bp Feature: domain Description: PRK15098 Location: 423450-425232 bp Feature: domain Description: PRK15098 Location: 423 450-42523 2 bp Feature: gene Location: 425310-425768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), Zn_ADH4 (cd08258), RVT-GII, GIIM (pfam08388), PRK15098 (beta-glucosidase BglX)

Seq: NOKA02000148.1 Lachnotalea glycerini strain CCRI-19302 NODE_148_length_2344_cov_763.716, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 1-2344 bp Neighborhood of RT #1 [1, 2344] RVT-GII Feature: gene Location: 1-1240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 316-1054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 316-1054 bp Feature: gene Location: 1981-2344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NOKA02000162.1 Lachnotalea glycerini strain CCRI-19302 NODE_163_length_1598_cov_4215.81, whole genome shotgun sequence (1598 bp)
Overview 1 RT 1: 1-925 bp Neighborhood of RT #1 [1, 1115] RVT-GII Feature: gene Location: 1-1115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292-925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292-925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII