myRT

myRT report for GCA_002251365.1_ASM225136v1

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Seq: NPJH01000006.1 Prevotella sp. P3-122 contig6, whole genome shotgun sequence (104894 bp)
Overview 1 RT 1: 73701-82119 bp 2 RT 2: 98900-104869 bp Neighborhood of RT #1 [73701, 82119] REC RVT-Retrons COG2865 Neighborhood of RT #2 [98900, 104869] nitrilase group_II_RT_mat RVT-UG6 dnaG Feature: gene Location: 73701-74441 bp Feature: gene Location: 75393-77381 bp Ori: OYP63663.1 Feature: domain Description: REC Location: 76527-76860 bp Feature: domain Description: REC Location: 76527-76860 bp Feature: gene Location: 77347-79341 bp Ori: OYP63664.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 77551-78145 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 77551 -781 45 bp Feature: gene Location: 79857-81326 bp Ori: OYP63665.1 Feature: domain Description: COG2865 Location: 79860-80952 bp Feature: domain Description: COG2865 Location: 79860-80952 bp Feature: gene Location: 81865-82119 bp Feature: gene Location: 98900-99514 bp Feature: gene Location: 99511-100386 bp Ori: OYP63679.1 Feature: domain Description: nitrilase Location: 99649-100036 bp Feature: domain Description: nitrilase Location: 99649-1 00036 bp Feature: gene Location: 100388-103564 bp Ori: OYP63680.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 100433-100760 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 00433-1 00760 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 101051-101471 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 1 01 051 -1 01 471 bp Feature: gene Location: 103548-104588 bp Ori: OYP63681.1 Feature: domain Description: dnaG Location: 103650-104580 bp Feature: domain Description: dnaG Location: 1 03650-1 04580 bp Feature: gene Location: 104609-104869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), RVT-Retrons, COG2865 (Predicted transcriptional regulator, contains HTH domain ), nitrilase (cl11424), group_II_RT_mat (TIGR04416), RVT-UG6, dnaG (TIGR01391)

Seq: NPJH01000066.1 Prevotella sp. P3-122 contig66, whole genome shotgun sequence (8635 bp)
Overview 1 RT 1: 119-2180 bp Neighborhood of RT #1 [119, 2194] RVT-GII GIIM DUF4377 Feature: gene Location: 119-1522 bp Ori: OYP59565.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1079 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1355 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1355 bp Feature: gene Location: 1758-1954 bp Feature: gene Location: 2006-2194 bp Ori: OYP59566.1 Feature: domain Description: DUF4377 Location: 2030-2180 bp Feature: domain Description: DUF4377 Location: 2 030-2 180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF4377 (pfam14302)

Seq: NPJH01000046.1 Prevotella sp. P3-122 contig46, whole genome shotgun sequence (78752 bp)
Overview 1 RT 1: 47105-50807 bp Neighborhood of RT #1 [47105, 50824] ZliS RVT-DGRs Avd_like DUF1566 Feature: gene Location: 47105-47683 bp Ori: OYP60379.1 Feature: domain Description: ZliS Location: 47213-47669 bp Feature: domain Description: ZliS Location: 47213 -47669 bp Feature: gene Location: 47701-48042 bp Feature: gene Location: 48180-49361 bp Ori: OYP60381.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 48363-49056 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 483 63 -49056 bp Feature: gene Location: 49590-49988 bp Ori: OYP60382.1 Feature: domain Description: Avd_like Location: 49629-49941 bp Feature: domain Description: Avd_like Location: 49629-49941 bp Feature: gene Location: 50060-50824 bp Ori: OYP60383.1 Feature: domain Description: DUF1566 Location: 50381-50807 bp Feature: domain Description: DUF1566 Location: 503 81-50807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ZliS (COG3926), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: NPJH01000038.1 Prevotella sp. P3-122 contig38, whole genome shotgun sequence (95416 bp)
Overview 1 RT 1: 90725-95326 bp Neighborhood of RT #1 [90725, 95400] RVT-GII GIIM INT_RitC_C_like Feature: gene Location: 90725-91249 bp Feature: gene Location: 91297-92628 bp Feature: gene Location: 93392-94798 bp Ori: OYP60876.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93734-94352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93734 -94 352 bp Feature: domain Description: GIIM Note: maturase Location: 94406-94610 bp Feature: domain Description: GIIM Note: maturase Location: 94 4 06-94 610 bp Feature: gene Location: 94930-95400 bp Ori: OYP60877.1 Feature: domain Description: INT_RitC_C_like Location: 94942-95326 bp Feature: domain Description: INT_RitC_C_like Location: 94 94 2-95326 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), INT_RitC_C_like (cd01182)

Seq: NPJH01000041.1 Prevotella sp. P3-122 contig41, whole genome shotgun sequence (171197 bp)
Overview 1 RT 1: 166374-170860 bp Neighborhood of RT #1 [166374, 171039] SusE CBM-Eb_CBM-Fb CBM-Ec_CBM-Fc DUF5115 DUF5115 CBM_SusE-F_like RVT-GII GIIM Feature: gene Location: 166374-167525 bp Ori: OYP60765.1 Feature: domain Description: SusE Location: 166446-166776 bp Feature: domain Description: SusE Location: 166446-166776 bp Feature: domain Description: CBM-Eb_CBM-Fb Location: 166902-167187 bp Feature: domain Description: CBM-Eb_CBM-Fb Location: 166902-167187 bp Feature: domain Description: CBM-Ec_CBM-Fc Location: 167214-167520 bp Feature: domain Description: CBM-Ec_CBM-Fc Location: 167214-1675 20 bp Feature: gene Location: 167601-169091 bp Ori: OYP60775.1 Feature: domain Description: DUF5115 Location: 167658-168447 bp Feature: domain Description: DUF5 115 Location: 16765 8-168447 bp Feature: domain Description: DUF5115 Location: 168453-168669 bp Feature: domain Description: DUF5 115 Location: 16845 3-168669 bp Feature: domain Description: CBM_SusE-F_like Location: 168816-169053 bp Feature: domain Description: CBM_SusE-F_like Location: 168816-16905 3 bp Feature: gene Location: 169600-171039 bp Ori: OYP60766.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169978-170596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169978-1705 96 bp Feature: domain Description: GIIM Note: maturase Location: 170650-170860 bp Feature: domain Description: GIIM Note: maturase Location: 17065 0-170860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SusE (pfam14292), CBM-Eb_CBM-Fb (cd12965), CBM-Ec_CBM-Fc (cd12966), DUF5115 (pfam17142), CBM_SusE-F_like (cd12956), RVT-GII, GIIM (pfam08388)

Seq: NPJH01000004.1 Prevotella sp. P3-122 contig4, whole genome shotgun sequence (1472 bp)
Overview 1 RT 1: 331-1471 bp Neighborhood of RT #1 [331, 1472] RVT-GII GIIM Feature: gene Location: 331-1472 bp Ori: OYP64020.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 538-1198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 538-1198 bp Feature: domain Description: GIIM Note: maturase Location: 1279-1471 bp Feature: domain Description: GIIM Note: maturase Location: 1279-1471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)