myRT

myRT report for GCA_002251435.1_ASM225143v1

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Seq: NPJI01000037.1 Prevotella sp. P2-180 contig37, whole genome shotgun sequence (190615 bp)
Overview 1 RT 1: 22678-26759 bp Neighborhood of RT #1 [22678, 26788] MurNAc-LAA RVT-DGRs Avd_like DUF1566 Feature: gene Location: 22678-23271 bp Feature: domain Description: MurNAc-LAA Location: 22687-23242 bp Feature: domain Description: MurNAc-LAA Location: 22687-23242 bp Feature: gene Location: 23306-23857 bp Feature: gene Location: 23928-25253 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24105-24810 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 241 05-2481 0 bp Feature: gene Location: 25523-25906 bp Feature: domain Description: Avd_like Location: 25547-25859 bp Feature: domain Description: Avd_like Location: 25547-25859 bp Feature: gene Location: 26009-26788 bp Feature: domain Description: DUF1566 Location: 26492-26759 bp Feature: domain Description: DUF1 566 Location: 26492-26759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MurNAc-LAA (cl02713), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: NPJI01000034.1 Prevotella sp. P2-180 contig34, whole genome shotgun sequence (146945 bp)
Overview 1 RT 1: 116357-120981 bp Neighborhood of RT #1 [116357, 120989] Couple_hipA HipA_C HTH_XRE RVT-GII M56_BlaR1_MecR1_like TonB_C Penicillinase_R Feature: gene Location: 116357-117535 bp Feature: domain Description: Couple_hipA Location: 116375-116717 bp Feature: domain Description: Couple_hipA Location: 116375-116717 bp Feature: domain Description: HipA_C Location: 116867-117518 bp Feature: domain Description: HipA_C Location: 116867-117518 bp Feature: gene Location: 117532-117840 bp Feature: domain Description: HTH_XRE Location: 117583-117754 bp Feature: domain Description: HTH_XRE Location: 117583-117754 bp Feature: gene Location: 117996-118694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118104-118686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118104-118686 bp Feature: gene Location: 119083-120633 bp Feature: domain Description: M56_BlaR1_MecR1_like Location: 119380-119869 bp Feature: domain Description: M56_BlaR1_MecR1_like Location: 119380-119869 bp Feature: domain Description: TonB_C Location: 120214-120445 bp Feature: domain Description: TonB_C Location: 12 02 14-12 0445 bp Feature: gene Location: 120630-120989 bp Feature: domain Description: Penicillinase_R Location: 120642-120981 bp Feature: domain Description: Penicillinase_R Location: 12 0642 -12 0981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Couple_hipA (pfam13657), HipA_C (pfam07804), HTH_XRE (smart00530), RVT-GII, M56_BlaR1_MecR1_like (cd07341), TonB_C (pfam03544), Penicillinase_R (pfam03965)

Seq: NPJI01000017.1 Prevotella sp. P2-180 contig17, whole genome shotgun sequence (1805 bp)
Overview 1 RT 1: 447-1605 bp Neighborhood of RT #1 [447, 1721] RVT-GII GIIM Feature: gene Location: 447-1721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654-1314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654-13 14 bp Feature: domain Description: GIIM Note: maturase Location: 1395-1605 bp Feature: domain Description: GIIM Note: maturase Location: 13 95-1605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NPJI01000001.1 Prevotella sp. P2-180 contig1, whole genome shotgun sequence (7534 bp)
Overview 1 RT 1: 122-3760 bp Neighborhood of RT #1 [122, 3786] RVT-GII RVT-GII group_II_RT_mat YeiB PRK11151 Feature: gene Location: 122-766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164-269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164 -269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269-458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269-4 58 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 458-659 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4 58-659 bp Feature: gene Location: 1624-2835 bp Feature: domain Description: YeiB Location: 1633-2830 bp Feature: domain Description: YeiB Location: 1633-2830 bp Feature: gene Location: 2860-3786 bp Feature: domain Description: PRK11151 Location: 2863-3760 bp Feature: domain Description: PRK11151 Location: 2863-3760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), YeiB (COG2311), PRK11151 (DNA-binding transcriptional regulator OxyR; Provisional)