myRT

myRT report for GCA_002251695.1_ASM225169v1

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Seq: NCTK01000002.1 Ralstonia solanacearum strain UW25 tig00000001, whole genome shotgun sequence (1931798 bp)
Overview 1 RT 1: 649756-653594 bp 2 RT 2: 1507064-1513009 bp Neighborhood of RT #1 [649756, 653599] COG3795 RVT-GII PRK11169 Neighborhood of RT #2 [1507064, 1513107] TM_helix TM_helix TM_helix TM_helix TM_helix PRK02237 RVT-GII UvrD Feature: gene Location: 649756-650187 bp Feature: domain Description: COG3795 Location: 649759-650125 bp Feature: domain Description: COG3795 Location: 649759-6501 25 bp Feature: gene Location: 650617-650874 bp Feature: gene Location: 650868-652398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 651279-651873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 651 279-651 873 bp Feature: gene Location: 652536-652841 bp Feature: gene Location: 653075-653599 bp Feature: domain Description: PRK11169 Location: 653135-653594 bp Feature: domain Description: PRK1 1 1 69 Location: 6531 35-653594 bp Feature: gene Location: 1507064-1508527 bp Feature: domain Description: TM_helix Location: 1507082-1507223 bp Feature: domain Description: TM_helix Location: 1 507082-1 507223 bp Feature: domain Description: TM_helix Location: 1507352-1507496 bp Feature: domain Description: TM_helix Location: 1 507352-1 507496 bp Feature: domain Description: TM_helix Location: 1507625-1507766 bp Feature: domain Description: TM_helix Location: 1 507625-1 507766 bp Feature: domain Description: TM_helix Location: 1507901-1508039 bp Feature: domain Description: TM_helix Location: 1 507901 -1 508039 bp Feature: domain Description: TM_helix Location: 1508186-1508288 bp Feature: domain Description: TM_helix Location: 1 5081 86-1 508288 bp Feature: gene Location: 1508607-1508939 bp Feature: domain Description: PRK02237 Location: 1508619-1508931 bp Feature: domain Description: PRK02237 Location: 1 50861 9-1 508931 bp Feature: gene Location: 1508984-1510513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1509392-1510082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 509392-1 51 0082 bp Feature: gene Location: 1510513-1510794 bp Feature: gene Location: 1510969-1513107 bp Feature: domain Description: UvrD Location: 1511026-1513009 bp Feature: domain Description: UvrD Location: 1 51 1 026-1 51 3009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3795 (Uncharacterized conserved protein ), RVT-GII, PRK11169 (leucine-responsive transcriptional regulator Lrp), TM_helix (pfam05552), PRK02237 (YnfA family protein), UvrD (COG0210)

Seq: NCTK01000001.1 Ralstonia solanacearum strain UW25 tig00000000, whole genome shotgun sequence (3838865 bp)
Overview 1 RT 1: 1010765-1016239 bp 2 RT 2: 2143576-2148033 bp Neighborhood of RT #1 [1010765, 1016239] DUF4337 nitrilase RVT-Retrons Neighborhood of RT #2 [2143576, 2148033] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1010765-1011337 bp Feature: domain Description: DUF4337 Location: 1010855-1011323 bp Feature: domain Description: DUF4337 Location: 1010855-101132 3 bp Feature: gene Location: 1011396-1012150 bp Feature: domain Description: nitrilase Location: 1011417-1011978 bp Feature: domain Description: nitrilase Location: 1011417-1011978 bp Feature: gene Location: 1012554-1014311 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1012689-1013331 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1012 689-1013331 bp Feature: gene Location: 1015137-1015481 bp Feature: gene Location: 1015484-1016239 bp Feature: gene Location: 2143576-2143878 bp Feature: gene Location: 2143897-2144343 bp Feature: gene Location: 2145222-2146919 bp Feature: RT Description: RVT_N Location: 2145270-2145513 bp Feature: RT Description: RVT_N Location: 2 1452 70-2 145513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2145558-2146191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 145558-2 146191 bp Feature: domain Description: GIIM Note: maturase Location: 2146248-2146476 bp Feature: domain Description: GIIM Note: maturase Location: 2 1462 48-2 146476 bp Feature: domain Description: HNHc Note: nucleases Location: 2146677-2146860 bp Feature: domain Description: HNHc Note: nucleases Location: 2 146677-2 146860 bp Feature: gene Location: 2146841-2147632 bp Feature: gene Location: 2147641-2148033 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4337 (pfam14235), nitrilase (cl11424), RVT-Retrons, RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)