myRT

myRT report for GCA_002252025.1_ASM225202v1

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Seq: NEFA01000082.1 Citrobacter freundii strain C191 Scaffold82, whole genome shotgun sequence (9871 bp)
Overview 1 RT 1: 2952-9480 bp Neighborhood of RT #1 [2952, 9480] COG4688 RVT-UG3 RVT-UG8 Feature: gene Location: 2952-4985 bp Ori: OYQ92421.1 Feature: domain Description: COG4688 Location: 2955-4890 bp Feature: domain Description: COG4688 Location: 2955-4890 bp Feature: gene Location: 5137-5397 bp Feature: gene Location: 5449-6798 bp Ori: OYQ92422.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 5905-6382 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 5905-6382 bp Feature: gene Location: 6791-8833 bp Ori: OYQ92423.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 7403-7850 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 7403-7850 bp Feature: gene Location: 9110-9322 bp Feature: gene Location: 9277-9480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4688 (Uncharacterized protein ), RVT-UG3, RVT-UG8

Seq: NEFA01000057.1 Citrobacter freundii strain C191 Scaffold57, whole genome shotgun sequence (24554 bp)
Overview 1 RT 1: 21197-24554 bp Neighborhood of RT #1 [21197, 24554] PRK10276 RVT-GII Zn_Tnp_IS1 HTH_Tnp_IS1 Feature: gene Location: 21197-21628 bp Ori: OYQ94089.1 Feature: domain Description: PRK10276 Location: 21248-21611 bp Feature: domain Description: PRK102 76 Location: 2 12 48-2 1611 bp Feature: gene Location: 21786-22037 bp Feature: gene Location: 22037-23521 bp Ori: OYQ94091.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22439-23129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 439-2 312 9 bp Feature: gene Location: 23673-24370 bp Feature: domain Description: Zn_Tnp_IS1 Location: 23679-23781 bp Feature: domain Description: Zn_Tnp_IS1 Location: 2 3679-2 3781 bp Feature: domain Description: HTH_Tnp_IS1 Location: 23802-23934 bp Feature: domain Description: HTH_Tnp_IS1 Location: 2 3802 -2 3934 bp Feature: gene Location: 24372-24554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759)

Seq: NEFA01000040.1 Citrobacter freundii strain C191 Scaffold40, whole genome shotgun sequence (41885 bp)
Overview 1 RT 1: 448-6316 bp Neighborhood of RT #1 [448, 6315] RVT-Retrons IAT_beta BID_1 Invasin_D3 BID_1 BID_1 BID_1 BID_1 D-aminoacylase Feature: gene Location: 448-729 bp Feature: gene Location: 760-1719 bp Ori: OYQ97339.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 937-1459 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 93 7-1459 bp Feature: gene Location: 2357-5659 bp Feature: domain Description: IAT_beta Location: 2579-3365 bp Feature: domain Description: IAT_beta Location: 2579-3 3 65 bp Feature: domain Description: BID_1 Location: 3722-4004 bp Feature: domain Description: BID_1 Location: 3 722-4004 bp Feature: domain Description: Invasin_D3 Location: 4043-4274 bp Feature: domain Description: Invasin_D3 Location: 4043 -4274 bp Feature: domain Description: BID_1 Location: 4364-4610 bp Feature: domain Description: BID_1 Location: 43 64-4610 bp Feature: domain Description: BID_1 Location: 4679-4913 bp Feature: domain Description: BID_1 Location: 4679-4913 bp Feature: domain Description: BID_1 Location: 4958-5198 bp Feature: domain Description: BID_1 Location: 4958-5198 bp Feature: domain Description: BID_1 Location: 5267-5534 bp Feature: domain Description: BID_1 Location: 5267-553 4 bp Feature: gene Location: 5659-6315 bp Feature: domain Description: D-aminoacylase Location: 5668-6316 bp Feature: domain Description: D-aminoacylase Location: 5668-63 16 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, IAT_beta (pfam11924), BID_1 (smart00634), Invasin_D3 (pfam09134), D-aminoacylase (cd01297)

Seq: NEFA01000058.1 Citrobacter freundii strain C191 Scaffold58, whole genome shotgun sequence (23644 bp)
Overview 1 RT 1: 138-1092 bp Neighborhood of RT #1 [138, 1121] RVT-Retrons ParE antidote_CC2985 Feature: gene Location: 138-539 bp Ori: OYQ93953.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 144-312 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 4 -312 bp Feature: gene Location: 602-886 bp Ori: OYQ93954.1 Feature: domain Description: ParE Location: 608-881 bp Feature: domain Description: ParE Location: 608-881 bp Feature: gene Location: 879-1121 bp Ori: OYQ93955.1 Feature: domain Description: antidote_CC2985 Location: 891-1092 bp Feature: domain Description: antidote_CC2985 Location: 891-1092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ParE (COG3668), antidote_CC2985 (TIGR02606)