myRT

myRT report for GCA_002252125.1_ASM225212v1

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Seq: NEEZ01000055.1 Citrobacter freundii strain c196 Scaffold55, whole genome shotgun sequence (24458 bp)
Overview 1 RT 1: 21113-23850 bp Neighborhood of RT #1 [21113, 24286] PRK10276 RVT-GII Zn_Tnp_IS1 HTH_Tnp_IS1 Feature: gene Location: 21113-21544 bp Ori: OYQ91702.1 Feature: domain Description: PRK10276 Location: 21164-21527 bp Feature: domain Description: PRK1 0276 Location: 21 1 64-21 527 bp Feature: gene Location: 21702-21953 bp Feature: gene Location: 21953-23437 bp Ori: OYQ91704.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22355-23045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22355-23045 bp Feature: gene Location: 23589-24286 bp Feature: domain Description: Zn_Tnp_IS1 Location: 23595-23697 bp Feature: domain Description: Zn_Tnp_IS1 Location: 23595-23697 bp Feature: domain Description: HTH_Tnp_IS1 Location: 23718-23850 bp Feature: domain Description: HTH_Tnp_IS1 Location: 2371 8-23850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759)

Seq: NEEZ01000081.1 Citrobacter freundii strain c196 Scaffold81, whole genome shotgun sequence (9871 bp)
Overview 1 RT 1: 2952-9480 bp Neighborhood of RT #1 [2952, 9480] COG4688 RVT-UG3 RVT-UG8 Feature: gene Location: 2952-4985 bp Ori: OYQ91066.1 Feature: domain Description: COG4688 Location: 2955-4890 bp Feature: domain Description: COG4688 Location: 2 955-4890 bp Feature: gene Location: 5137-5397 bp Feature: gene Location: 5449-6798 bp Ori: OYQ91067.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 5905-6382 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 5905-6382 bp Feature: gene Location: 6791-8833 bp Ori: OYQ91068.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 7403-7850 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 7403-7850 bp Feature: gene Location: 9110-9322 bp Feature: gene Location: 9277-9480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4688 (Uncharacterized protein ), RVT-UG3, RVT-UG8

Seq: NEEZ01000057.1 Citrobacter freundii strain c196 Scaffold57, whole genome shotgun sequence (23465 bp)
Overview 1 RT 1: 126-1080 bp Neighborhood of RT #1 [126, 1109] RVT-Retrons ParE antidote_CC2985 Feature: gene Location: 126-527 bp Ori: OYQ91587.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132-300 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 2-3 00 bp Feature: gene Location: 590-874 bp Ori: OYQ91588.1 Feature: domain Description: ParE Location: 596-869 bp Feature: domain Description: ParE Location: 596-869 bp Feature: gene Location: 867-1109 bp Ori: OYQ91589.1 Feature: domain Description: antidote_CC2985 Location: 879-1080 bp Feature: domain Description: antidote_CC2985 Location: 879-1080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ParE (COG3668), antidote_CC2985 (TIGR02606)

Seq: NEEZ01000042.1 Citrobacter freundii strain c196 Scaffold42, whole genome shotgun sequence (41849 bp)
Overview 1 RT 1: 35547-41414 bp Neighborhood of RT #1 [35547, 41414] D-aminoacylase IAT_beta BID_1 Invasin_D3 BID_1 BID_1 BID_1 BID_1 RVT-Retrons Feature: gene Location: 35547-36203 bp Feature: domain Description: D-aminoacylase Location: 35556-36204 bp Feature: domain Description: D-aminoacylase Location: 35556-36204 bp Feature: gene Location: 36203-39505 bp Feature: domain Description: IAT_beta Location: 36425-37211 bp Feature: domain Description: IAT_beta Location: 364 25-37211 bp Feature: domain Description: BID_1 Location: 37568-37850 bp Feature: domain Description: BID_1 Location: 37568-37850 bp Feature: domain Description: Invasin_D3 Location: 37889-38120 bp Feature: domain Description: Invasin_D3 Location: 37889-38120 bp Feature: domain Description: BID_1 Location: 38210-38456 bp Feature: domain Description: BID_1 Location: 38210-384 56 bp Feature: domain Description: BID_1 Location: 38525-38759 bp Feature: domain Description: BID_1 Location: 38525-38759 bp Feature: domain Description: BID_1 Location: 38804-39044 bp Feature: domain Description: BID_1 Location: 38804 -3904 4 bp Feature: domain Description: BID_1 Location: 39113-39380 bp Feature: domain Description: BID_1 Location: 39113-39380 bp Feature: gene Location: 40143-41102 bp Ori: OYQ92520.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40320-40842 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 0320-4 084 2 bp Feature: gene Location: 41133-41414 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D-aminoacylase (cd01297), IAT_beta (pfam11924), BID_1 (smart00634), Invasin_D3 (pfam09134), RVT-Retrons