myRT

myRT report for GCA_002252565.1_ASM225256v1

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Seq: NPML01000011.1 Petroclostridium xylanilyticum strain SK-Y3 Scaffold1_11, whole genome shotgun sequence (260763 bp)
Overview 1 RT 1: 122389-127387 bp Neighborhood of RT #1 [122389, 127434] LarA GntR RVT-GII GIIM guaA_Cterm NrdG Feature: gene Location: 122389-123663 bp Feature: domain Description: LarA Location: 122488-123367 bp Feature: domain Description: LarA Location: 1 22488-1 23367 bp Feature: gene Location: 123704-124390 bp Feature: domain Description: GntR Location: 123719-124364 bp Feature: domain Description: GntR Location: 1 2371 9-1 24364 bp Feature: gene Location: 124596-126002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124944-125562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 24944-1 25562 bp Feature: domain Description: GIIM Note: maturase Location: 125613-125838 bp Feature: domain Description: GIIM Note: maturase Location: 1 2561 3-1 25838 bp Feature: gene Location: 126515-126652 bp Feature: domain Description: guaA_Cterm Location: 126536-126647 bp Feature: domain Description: guaA_Cterm Location: 1 26536-1 26647 bp Feature: gene Location: 126922-127434 bp Feature: domain Description: NrdG Location: 126949-127387 bp Feature: domain Description: NrdG Location: 1 26949-1 27387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LarA (COG3875), GntR (pfam00392), RVT-GII, GIIM (pfam08388), guaA_Cterm (TIGR00884), NrdG (TIGR02491)

Seq: NPML01000003.1 Petroclostridium xylanilyticum strain SK-Y3 Scaffold1_3, whole genome shotgun sequence (144244 bp)
Overview 1 RT 1: 8876-15597 bp 2 RT 2: 28033-33826 bp Neighborhood of RT #1 [8876, 15611] PLN03080 PLN03080 RVT-GII GIIM FGGY_D-XK_EcXK-like AcoR CsgD Neighborhood of RT #2 [28033, 33828] Glyoxalase RVT-GII GIIM PurR PRK00924 Feature: gene Location: 8876-11044 bp Feature: domain Description: PLN03080 Location: 8885-10679 bp Feature: domain Description: PLN03080 Location: 8885-10679 bp Feature: domain Description: PLN03080 Location: 10703-10955 bp Feature: domain Description: PLN03080 Location: 10703-10955 bp Feature: gene Location: 11636-11836 bp Feature: gene Location: 11933-13201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12146-12767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 146-12 767 bp Feature: domain Description: GIIM Note: maturase Location: 12809-13040 bp Feature: domain Description: GIIM Note: maturase Location: 12 809-13040 bp Feature: gene Location: 13375-14418 bp Feature: domain Description: FGGY_D-XK_EcXK-like Location: 13381-14368 bp Feature: domain Description: FGGY_D-XK_EcXK-like Location: 13381-14368 bp Feature: gene Location: 14835-15611 bp Feature: domain Description: AcoR Location: 14844-15387 bp Feature: domain Description: AcoR Location: 14844-15387 bp Feature: domain Description: CsgD Location: 15411-15597 bp Feature: domain Description: CsgD Location: 15411-15597 bp Feature: gene Location: 28033-29283 bp Feature: gene Location: 29369-29749 bp Feature: domain Description: Glyoxalase Location: 29381-29720 bp Feature: domain Description: Glyoxalase Location: 2 9381-2 972 0 bp Feature: gene Location: 30220-31626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30568-31186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30568-31186 bp Feature: domain Description: GIIM Note: maturase Location: 31237-31462 bp Feature: domain Description: GIIM Note: maturase Location: 312 37-31462 bp Feature: gene Location: 31907-32926 bp Feature: domain Description: PurR Location: 31913-32894 bp Feature: domain Description: PurR Location: 31913-32 894 bp Feature: gene Location: 33001-33828 bp Feature: domain Description: PRK00924 Location: 33004-33826 bp Feature: domain Description: PRK0092 4 Location: 33004-3382 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), FGGY_D-XK_EcXK-like (cd07808), AcoR (COG3284), CsgD (COG2771), PLN03080 (Probable beta-xylosidase; Provisional), Glyoxalase (pfam00903), PurR (COG1609), PRK00924 (5-keto-4-deoxyuronate isomerase; Provisional)

Seq: NPML01000019.1 Petroclostridium xylanilyticum strain SK-Y3 Scaffold2_1, whole genome shotgun sequence (639631 bp)
Overview 1 RT 1: 34962-38799 bp 2 RT 2: 48327-52022 bp 3 RT 3: 67940-74275 bp Neighborhood of RT #1 [34962, 38996] major_cap_HK97 GIIM RVT-GII S14_ClpP_1 Neighborhood of RT #2 [48327, 52108] HNH RVT-GII GIIM CxxCG_CxxCG_HTH GepA Neighborhood of RT #3 [67940, 74754] Resolvase Recombinase Zn_ribbon_recom RVT-GII Intron_maturas2 Ser_Recombinase Resolvase Recombinase Zn_ribbon_recom Feature: gene Location: 34962-36164 bp Feature: domain Description: major_cap_HK97 Location: 34983-36150 bp Feature: domain Description: major_cap_HK97 Location: 3 4983 -3 6150 bp Feature: gene Location: 36288-36653 bp Feature: domain Description: GIIM Note: maturase Location: 36294-36495 bp Feature: domain Description: GIIM Note: maturase Location: 3 6294-3 6495 bp Feature: gene Location: 36788-37555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37001-37547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 7001-3 7547 bp Feature: gene Location: 37796-37942 bp Feature: gene Location: 38247-38996 bp Feature: domain Description: S14_ClpP_1 Location: 38322-38799 bp Feature: domain Description: S14_ClpP_1 Location: 3 83 22-3 8799 bp Feature: gene Location: 48327-48686 bp Feature: domain Description: HNH Note: nucleases Location: 48522-48657 bp Feature: domain Description: HNH Note: nucleases Location: 48522-48657 bp Feature: gene Location: 48950-49096 bp Feature: gene Location: 49163-50569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49511-50129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49511-50129 bp Feature: domain Description: GIIM Note: maturase Location: 50180-50405 bp Feature: domain Description: GIIM Note: maturase Location: 50180-50405 bp Feature: gene Location: 50788-51057 bp Feature: gene Location: 51110-52108 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 51134-51509 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 5113 4-51509 bp Feature: domain Description: GepA Location: 51647-52022 bp Feature: domain Description: GepA Location: 51647-52022 bp Feature: gene Location: 67940-68998 bp Feature: gene Location: 69104-70525 bp Feature: domain Description: Resolvase Location: 69137-69449 bp Feature: domain Description: Resolvase Location: 6913 7-69449 bp Feature: domain Description: Recombinase Location: 69518-69842 bp Feature: domain Description: Recombinase Location: 69518-69842 bp Feature: domain Description: Zn_ribbon_recom Location: 69902-70082 bp Feature: domain Description: Zn_ribbon_recom Location: 69902-70082 bp Feature: gene Location: 70597-72372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70864-71674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70864-71674 bp Feature: domain Description: Intron_maturas2 Location: 71752-72043 bp Feature: domain Description: Intron_maturas2 Location: 71752-72043 bp Feature: gene Location: 72885-73109 bp Feature: domain Description: Ser_Recombinase Location: 72972-73098 bp Feature: domain Description: Ser_Recombinase Location: 72972-73 098 bp Feature: gene Location: 73123-74754 bp Feature: domain Description: Resolvase Location: 73201-73645 bp Feature: domain Description: Resolvase Location: 73 201-73 645 bp Feature: domain Description: Recombinase Location: 73714-74038 bp Feature: domain Description: Recombinase Location: 73 714-7403 8 bp Feature: domain Description: Zn_ribbon_recom Location: 74098-74275 bp Feature: domain Description: Zn_ribbon_recom Location: 74098-74275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT major_cap_HK97 (TIGR01554), GIIM (pfam08388), RVT-GII, S14_ClpP_1 (cd07016), HNH (pfam01844), CxxCG_CxxCG_HTH (TIGR03830), GepA (COG3600), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)
Intron_maturas2 (pfam01348), Ser_Recombinase (cl02788)

Seq: NPML01000027.1 Petroclostridium xylanilyticum strain SK-Y3 Scaffold3_1, whole genome shotgun sequence (133895 bp)
Overview 1 RT 1: 25091-29524 bp 2 RT 2: 106723-112917 bp Neighborhood of RT #1 [25091, 30009] Ser_Recombinase RVT-GII Intron_maturas2 Resolvase Recombinase Zn_ribbon_recom TBCC_N HNH_2 Neighborhood of RT #2 [106723, 113114] Recombinase Zn_ribbon_recom Ser_Recombinase RVT-GII Intron_maturas2 Resolvase Recombinase Zn_ribbon_recom TBCC_N 4HB_MCP_1 Feature: gene Location: 25091-25378 bp Feature: domain Description: Ser_Recombinase Location: 25241-25367 bp Feature: domain Description: Ser_Recombinase Location: 2524 1-25367 bp Feature: gene Location: 25891-26109 bp Feature: gene Location: 26176-27666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26179-26965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26179-26965 bp Feature: domain Description: Intron_maturas2 Location: 27049-27337 bp Feature: domain Description: Intron_maturas2 Location: 2704 9-27337 bp Feature: gene Location: 27828-29183 bp Feature: domain Description: Resolvase Location: 27834-28083 bp Feature: domain Description: Resolvase Location: 27834 -28083 bp Feature: domain Description: Recombinase Location: 28152-28473 bp Feature: domain Description: Recombinase Location: 28152-284 73 bp Feature: domain Description: Zn_ribbon_recom Location: 28548-28725 bp Feature: domain Description: Zn_ribbon_recom Location: 2854 8-28725 bp Feature: domain Description: TBCC_N Location: 28908-29112 bp Feature: domain Description: TBCC_N Location: 28908-29112 bp Feature: gene Location: 29245-30009 bp Feature: domain Description: HNH_2 Location: 29374-29524 bp Feature: domain Description: HNH_2 Location: 29374 -29524 bp Feature: gene Location: 106723-107703 bp Feature: domain Description: Recombinase Location: 106786-107008 bp Feature: domain Description: Recombinase Location: 106786-107008 bp Feature: domain Description: Zn_ribbon_recom Location: 107083-107257 bp Feature: domain Description: Zn_ribbon_recom Location: 107083-107257 bp Feature: gene Location: 107651-107884 bp Feature: domain Description: Ser_Recombinase Location: 107747-107873 bp Feature: domain Description: Ser_Recombinase Location: 10774 7-107873 bp Feature: gene Location: 108397-110172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108664-109474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108664 -1094 74 bp Feature: domain Description: Intron_maturas2 Location: 109552-109843 bp Feature: domain Description: Intron_maturas2 Location: 109552-10984 3 bp Feature: gene Location: 110334-111689 bp Feature: domain Description: Resolvase Location: 110340-110589 bp Feature: domain Description: Resolvase Location: 11034 0-110589 bp Feature: domain Description: Recombinase Location: 110658-110979 bp Feature: domain Description: Recombinase Location: 110658-110979 bp Feature: domain Description: Zn_ribbon_recom Location: 111054-111231 bp Feature: domain Description: Zn_ribbon_recom Location: 111054 -111231 bp Feature: domain Description: TBCC_N Location: 111414-111615 bp Feature: domain Description: TBCC_N Location: 1114 14 -111615 bp Feature: gene Location: 112341-113114 bp Feature: domain Description: 4HB_MCP_1 Location: 112401-112917 bp Feature: domain Description: 4 HB_MCP_1 Location: 1124 01-112917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ser_Recombinase (cl02788), RVT-GII, Intron_maturas2 (pfam01348), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), TBCC_N (pfam16752), HNH_2 (pfam13391), 4HB_MCP_1 (pfam12729)

Seq: NPML01000029.1 Petroclostridium xylanilyticum strain SK-Y3 Scaffold3_3, whole genome shotgun sequence (323101 bp)
Overview 1 RT 1: 5768-10341 bp 2 RT 2: 131840-139026 bp Neighborhood of RT #1 [5768, 10388] Ser_Recombinase RVT-GII Intron_maturas2 Resolvase Recombinase Zn_ribbon_recom TBCC_N HTH_17 Neighborhood of RT #2 [131840, 139031] PurR PBP2_Maltose_binding_like RVT-GII GIIM UgpA MalG Feature: gene Location: 5768-5929 bp Feature: gene Location: 6013-6228 bp Feature: domain Description: Ser_Recombinase Location: 6091-6217 bp Feature: domain Description: Ser_Recombinase Location: 6091-6217 bp Feature: gene Location: 6741-8516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7008-7818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7008-7818 bp Feature: domain Description: Intron_maturas2 Location: 7896-8187 bp Feature: domain Description: Intron_maturas2 Location: 7896-8187 bp Feature: gene Location: 8588-10033 bp Feature: domain Description: Resolvase Location: 8621-8933 bp Feature: domain Description: Resolvase Location: 8621-8933 bp Feature: domain Description: Recombinase Location: 9002-9323 bp Feature: domain Description: Recombinase Location: 9002-9323 bp Feature: domain Description: Zn_ribbon_recom Location: 9398-9575 bp Feature: domain Description: Zn_ribbon_recom Location: 9398-95 75 bp Feature: domain Description: TBCC_N Location: 9758-9959 bp Feature: domain Description: TBCC_N Location: 975 8-995 9 bp Feature: gene Location: 10209-10388 bp Feature: domain Description: HTH_17 Location: 10218-10341 bp Feature: domain Description: HTH_17 Location: 10218-10341 bp Feature: gene Location: 131840-132859 bp Feature: domain Description: PurR Location: 131849-132848 bp Feature: domain Description: PurR Location: 131849-132848 bp Feature: gene Location: 133474-134796 bp Feature: domain Description: PBP2_Maltose_binding_like Location: 133675-134767 bp Feature: domain Description: PBP2_Maltose_binding_like Location: 133675 -134767 bp Feature: gene Location: 135270-136676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135618-136236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135 618-136236 bp Feature: domain Description: GIIM Note: maturase Location: 136287-136512 bp Feature: domain Description: GIIM Note: maturase Location: 136287-1365 12 bp Feature: gene Location: 136894-138195 bp Feature: domain Description: UgpA Location: 137281-138181 bp Feature: domain Description: UgpA Location: 137281-138181 bp Feature: gene Location: 138192-139031 bp Feature: domain Description: MalG Location: 138219-139026 bp Feature: domain Description: MalG Location: 138219-139026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), Ser_Recombinase (cl02788), RVT-GII, Intron_maturas2 (pfam01348), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), TBCC_N (pfam16752), PurR (COG1609), PBP2_Maltose_binding_like (cd13586)
GIIM (pfam08388), UgpA (COG1175), MalG (COG3833)