myRT

myRT report for GCA_002253205.1_ASM225320v1

Download annotations/find similar RTs

Seq: NGOF01000011.1 Lactobacillus johnsonii strain 117k 117k_12, whole genome shotgun sequence (283128 bp)
Overview 1 RT 1: 130251-137834 bp Neighborhood of RT #1 [130251, 137848] PTS_IIB_chitobiose_lichenan SIR2-like RVT-AbiA HEPN_AbiA_CTD RmlD_sub_bind dTDP_sugar_isom Feature: gene Location: 130251-130559 bp Ori: OYS09749.1 Feature: domain Description: PTS_IIB_chitobiose_lichenan Location: 130263-130539 bp Feature: domain Description: PTS_IIB_chitobiose_lichenan Location: 1 30263-1 30539 bp Feature: gene Location: 130856-133672 bp Ori: OYS09750.1 Feature: domain Description: SIR2-like Location: 130934-131522 bp Feature: domain Description: SIR2-like Location: 1 30934-1 31 522 bp Feature: gene Location: 134114-136039 bp Ori: OYS09751.1 Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 134498-135008 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 1 34498-1 35008 bp Feature: domain Description: HEPN_AbiA_CTD Location: 135647-136019 bp Feature: domain Description: HEPN_AbiA_CTD Location: 1 35647-1 3601 9 bp Feature: gene Location: 136237-137223 bp Ori: OYS09752.1 Feature: domain Description: RmlD_sub_bind Location: 136240-137188 bp Feature: domain Description: RmlD_sub_bind Location: 1 36240-1 371 88 bp Feature: gene Location: 137240-137848 bp Ori: OYS09753.1 Feature: domain Description: dTDP_sugar_isom Location: 137279-137834 bp Feature: domain Description: dTDP_sugar_isom Location: 1 37279-1 37834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PTS_IIB_chitobiose_lichenan (cd05564), SIR2-like (cd01406), RVT-AbiA, HEPN_AbiA_CTD (pfam18732), RmlD_sub_bind (pfam04321), dTDP_sugar_isom (pfam00908)

Seq: NGOF01000018.1 Lactobacillus johnsonii strain 117k 117k_19, whole genome shotgun sequence (1943 bp)
Overview 1 RT 1: 86-1169 bp Neighborhood of RT #1 [86, 1381] RVT-GII GIIM Feature: gene Location: 86-1381 bp Ori: OYS09328.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287-905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 87-905 bp Feature: domain Description: GIIM Note: maturase Location: 959-1169 bp Feature: domain Description: GIIM Note: maturase Location: 959-1169 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)