myRT

myRT report for GCA_002253275.1_ASM225327v1

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Seq: NGOH01000072.1 Lactobacillus johnsonii strain 117c 117c_76, whole genome shotgun sequence (1943 bp)
Overview 1 RT 1: 563-1646 bp Neighborhood of RT #1 [563, 1858] RVT-GII GIIM Feature: gene Location: 563-1858 bp Ori: OYS12097.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 764-1382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 764-1 382 bp Feature: domain Description: GIIM Note: maturase Location: 1436-1646 bp Feature: domain Description: GIIM Note: maturase Location: 1 436-1 646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NGOH01000039.1 Lactobacillus johnsonii strain 117c 117c_43, whole genome shotgun sequence (22400 bp)
Overview 1 RT 1: 8789-16372 bp Neighborhood of RT #1 [8789, 16386] PTS_IIB_chitobiose_lichenan SIR2-like RVT-AbiA HEPN_AbiA_CTD RmlD_sub_bind dTDP_sugar_isom Feature: gene Location: 8789-9097 bp Ori: OYS13729.1 Feature: domain Description: PTS_IIB_chitobiose_lichenan Location: 8801-9077 bp Feature: domain Description: PTS_IIB_chitobiose_lichenan Location: 8801-9077 bp Feature: gene Location: 9394-12210 bp Ori: OYS13730.1 Feature: domain Description: SIR2-like Location: 9472-10060 bp Feature: domain Description: SIR2 -like Location: 9472 -10060 bp Feature: gene Location: 12652-14577 bp Ori: OYS13731.1 Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 13036-13546 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 13036-13546 bp Feature: domain Description: HEPN_AbiA_CTD Location: 14185-14557 bp Feature: domain Description: HEPN_AbiA_CTD Location: 14185-14557 bp Feature: gene Location: 14775-15761 bp Ori: OYS13732.1 Feature: domain Description: RmlD_sub_bind Location: 14778-15726 bp Feature: domain Description: RmlD_sub_bind Location: 14778-1572 6 bp Feature: gene Location: 15778-16386 bp Ori: OYS13733.1 Feature: domain Description: dTDP_sugar_isom Location: 15817-16372 bp Feature: domain Description: dTDP_sugar_isom Location: 15817-16372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PTS_IIB_chitobiose_lichenan (cd05564), SIR2-like (cd01406), RVT-AbiA, HEPN_AbiA_CTD (pfam18732), RmlD_sub_bind (pfam04321), dTDP_sugar_isom (pfam00908)