myRT

myRT report for GCA_002254105.1_ASM225410v1

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Seq: NGPX01000011.1 Lactobacillus reuteri strain 105n 105n_11, whole genome shotgun sequence (39273 bp)
Overview 1 RT 1: 35448-38663 bp Neighborhood of RT #1 [35448, 38827] MetK Adenine_glyco RVT-GII GIIM Feature: gene Location: 35448-36635 bp Ori: OYS95189.1 Feature: domain Description: MetK Location: 35451-36627 bp Feature: domain Description: MetK Location: 35451 -36627 bp Feature: gene Location: 36796-37335 bp Ori: OYS95190.1 Feature: domain Description: Adenine_glyco Location: 36820-37330 bp Feature: domain Description: Adenine_glyco Location: 36820-37330 bp Feature: gene Location: 37445-38827 bp Ori: OYS95191.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37763-38381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37763-38381 bp Feature: domain Description: GIIM Note: maturase Location: 38435-38663 bp Feature: domain Description: GIIM Note: maturase Location: 38435-38663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MetK (COG0192), Adenine_glyco (pfam03352), RVT-GII, GIIM (pfam08388)

Seq: NGPX01000024.1 Lactobacillus reuteri strain 105n 105n_24, whole genome shotgun sequence (128980 bp)
Overview 1 RT 1: 1-6125 bp Neighborhood of RT #1 [1, 6125] Doc RVT-AbiP2 RVT-AbiP2 group_II_RT_mat COG3464 Feature: gene Location: 1-227 bp Feature: gene Location: 230-625 bp Ori: OYS93749.1 Feature: domain Description: Doc Location: 239-614 bp Feature: domain Description: Doc Location: 2 39-614 bp Feature: gene Location: 873-1565 bp Ori: OYS93750.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1401-1554 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1401-1554 bp Feature: gene Location: 1595-2926 bp Ori: OYS93751.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1598-1859 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1598-1859 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2231-2378 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 2 31-2 378 bp Feature: gene Location: 3489-4815 bp Feature: domain Description: COG3464 Location: 3534-4593 bp Feature: domain Description: COG3464 Location: 3534-4593 bp Feature: gene Location: 5046-6125 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Doc (COG3654), RVT-AbiP2, group_II_RT_mat (TIGR04416), COG3464 (Transposase )

Seq: NGPX01000007.1 Lactobacillus reuteri strain 105n 105n_7, whole genome shotgun sequence (55284 bp)
Overview 1 RT 1: 101-5317 bp Neighborhood of RT #1 [101, 5319] galactose_mutarotase_like RVT-GII GIIM DacC Feature: gene Location: 101-316 bp Feature: gene Location: 434-1471 bp Ori: OYS95451.1 Feature: domain Description: galactose_mutarotase_like Location: 488-1460 bp Feature: domain Description: galactose_mutarotase_like Location: 488-1460 bp Feature: gene Location: 1572-2954 bp Ori: OYS95452.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1890-2508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1890-2508 bp Feature: domain Description: GIIM Note: maturase Location: 2562-2790 bp Feature: domain Description: GIIM Note: maturase Location: 2562-2790 bp Feature: gene Location: 3458-3898 bp Feature: gene Location: 4075-5319 bp Ori: OYS95454.1 Feature: domain Description: DacC Location: 4111-5317 bp Feature: domain Description: DacC Location: 4111-53 17 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT galactose_mutarotase_like (cd09019), RVT-GII, GIIM (pfam08388), DacC (COG1686)

Seq: NGPX01000037.1 Lactobacillus reuteri strain 105n 105n_37, whole genome shotgun sequence (10008 bp)
Overview 1 RT 1: 6806-9398 bp Neighborhood of RT #1 [6806, 9562] NTP-PPase_u3 RVT-GII GIIM Feature: gene Location: 6806-7138 bp Ori: OYS93067.1 Feature: domain Description: NTP-PPase_u3 Location: 6821-7067 bp Feature: domain Description: NTP-PPase_u3 Location: 6821-7067 bp Feature: gene Location: 7288-7512 bp Feature: gene Location: 8180-9562 bp Ori: OYS93069.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8498-9116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 98-9116 bp Feature: domain Description: GIIM Note: maturase Location: 9170-9398 bp Feature: domain Description: GIIM Note: maturase Location: 9170-9398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP-PPase_u3 (cd11540), RVT-GII, GIIM (pfam08388)

Seq: NGPX01000013.1 Lactobacillus reuteri strain 105n 105n_13, whole genome shotgun sequence (259010 bp)
Overview 1 RT 1: 52315-58755 bp Neighborhood of RT #1 [52315, 58760] LysM AraJ RVT-GII GIIM PRK13690 PRK05362 Feature: gene Location: 52315-53394 bp Ori: OYS94612.1 Feature: domain Description: LysM Location: 52534-52663 bp Feature: domain Description: LysM Location: 5 25 34-5 2663 bp Feature: gene Location: 53487-54647 bp Ori: OYS94613.1 Feature: domain Description: AraJ Location: 53505-54621 bp Feature: domain Description: AraJ Location: 5 35 05 -5 4621 bp Feature: gene Location: 54760-56142 bp Ori: OYS94614.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55078-55696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 5 078-5 5 696 bp Feature: domain Description: GIIM Note: maturase Location: 55750-55978 bp Feature: domain Description: GIIM Note: maturase Location: 5 5 75 0-5 5 978 bp Feature: gene Location: 56944-57522 bp Ori: OYS94615.1 Feature: domain Description: PRK13690 Location: 56965-57502 bp Feature: domain Description: PRK13690 Location: 5 6965 -5 75 02 bp Feature: gene Location: 57561-58760 bp Feature: domain Description: PRK05362 Location: 57585-58755 bp Feature: domain Description: PRK05 362 Location: 5 75 85 -5 875 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysM (smart00257), AraJ (COG2814), RVT-GII, GIIM (pfam08388), PRK13690 (hypothetical protein; Provisional), PRK05362 (phosphopentomutase; Provisional)

Seq: NGPX01000035.1 Lactobacillus reuteri strain 105n 105n_35, whole genome shotgun sequence (115052 bp)
Overview 1 RT 1: 111998-114442 bp Neighborhood of RT #1 [111998, 114606] HD_2 RVT-GII GIIM Feature: gene Location: 111998-112270 bp Feature: gene Location: 112376-113014 bp Ori: OYS93242.1 Feature: domain Description: HD_2 Location: 112391-112940 bp Feature: domain Description: HD_2 Location: 112391-112940 bp Feature: gene Location: 113224-114606 bp Ori: OYS93243.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113542-114160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113542-11416 0 bp Feature: domain Description: GIIM Note: maturase Location: 114214-114442 bp Feature: domain Description: GIIM Note: maturase Location: 114214-114442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HD_2 (pfam12917), RVT-GII, GIIM (pfam08388)

Seq: NGPX01000100.1 Lactobacillus reuteri strain 105n 105n_100, whole genome shotgun sequence (79555 bp)
Overview 1 RT 1: 447-4906 bp Neighborhood of RT #1 [447, 4947] RVT-GII GIIM Fructosamin_kin aspS Feature: gene Location: 447-1829 bp Ori: OYS91706.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 65-1383 bp Feature: domain Description: GIIM Note: maturase Location: 1437-1665 bp Feature: domain Description: GIIM Note: maturase Location: 1437 -1665 bp Feature: gene Location: 1915-2763 bp Ori: OYS91707.1 Feature: domain Description: Fructosamin_kin Location: 1963-2758 bp Feature: domain Description: Fructosamin_kin Location: 1963-27 58 bp Feature: gene Location: 3145-4947 bp Ori: OYS91708.1 Feature: domain Description: aspS Location: 3148-4906 bp Feature: domain Description: aspS Location: 3148-4906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Fructosamin_kin (pfam03881), aspS (PRK00476)

Seq: NGPX01000054.1 Lactobacillus reuteri strain 105n 105n_54, whole genome shotgun sequence (2657 bp)
Overview 1 RT 1: 447-2465 bp Neighborhood of RT #1 [447, 2527] RVT-GII GIIM INT_ICEBs1_C_like Feature: gene Location: 447-1829 bp Ori: OYS92842.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-138 3 bp Feature: domain Description: GIIM Note: maturase Location: 1437-1665 bp Feature: domain Description: GIIM Note: maturase Location: 1437-1665 bp Feature: gene Location: 1997-2527 bp Ori: OYS92843.1 Feature: domain Description: INT_ICEBs1_C_like Location: 2039-2465 bp Feature: domain Description: INT_ICEBs1_C_like Location: 2039-2465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), INT_ICEBs1_C_like (cd01189)