myRT

myRT report for GCA_002257235.1_ASM225723v1

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Seq: NCGZ01000123.1 Alphaproteobacteria bacterium 16-39-46 04302015_16_scaffold_6282, whole genome shotgun sequence (1492 bp)
Overview 1 RT 1: 162-1040 bp Neighborhood of RT #1 [162, 1051] RVT-GII DDE_3 DDE_3 Feature: gene Location: 162-386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183-294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 83-294 bp Feature: gene Location: 577-816 bp Feature: domain Description: DDE_3 Location: 580-748 bp Feature: domain Description: DDE_3 Location: 580-748 bp Feature: gene Location: 830-1051 bp Feature: domain Description: DDE_3 Location: 833-1040 bp Feature: domain Description: DDE_3 Location: 833-1 040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_3 (pfam13358)

Seq: NCGZ01000012.1 Alphaproteobacteria bacterium 16-39-46 04302015_16_scaffold_422, whole genome shotgun sequence (27584 bp)
Overview 1 RT 1: 73-4217 bp Neighborhood of RT #1 [73, 4228] recomb_XerD RVT-GII rve PRK08181 Feature: gene Location: 73-675 bp Feature: domain Description: recomb_XerD Location: 370-673 bp Feature: domain Description: recomb_XerD Location: 370-673 bp Feature: gene Location: 858-1493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1050-1443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1050-1443 bp Feature: gene Location: 1957-3483 bp Feature: domain Description: rve Location: 2344-2737 bp Feature: domain Description: rve Location: 2 344-2 737 bp Feature: gene Location: 3476-4228 bp Feature: domain Description: PRK08181 Location: 3491-4217 bp Feature: domain Description: PRK08181 Location: 3491-42 17 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), PRK08181 (transposase; Validated), recomb_XerD (TIGR02225), RVT-GII

Seq: NCGZ01000122.1 Alphaproteobacteria bacterium 16-39-46 04302015_16_scaffold_6261, whole genome shotgun sequence (1495 bp)
Overview 1 RT 1: 69-1495 bp Neighborhood of RT #1 [69, 1495] RVT_N RVT-GII Feature: gene Location: 69-713 bp Feature: RT Description: RVT_N Location: 126-369 bp Feature: RT Description: RVT_N Location: 126-3 69 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 414-699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 414-699 bp Feature: gene Location: 1302-1495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: NCGZ01000023.1 Alphaproteobacteria bacterium 16-39-46 04302015_16_scaffold_509, whole genome shotgun sequence (22005 bp)
Overview 1 RT 1: 10-1710 bp Neighborhood of RT #1 [10, 1772] RVT-GII GIIM PIN_Pae0151-like Phd Feature: gene Location: 10-780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13-265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13-265 bp Feature: domain Description: GIIM Note: maturase Location: 319-550 bp Feature: domain Description: GIIM Note: maturase Location: 319-550 bp Feature: gene Location: 1096-1509 bp Feature: domain Description: PIN_Pae0151-like Location: 1111-1498 bp Feature: domain Description: PIN_Pae0151-like Location: 1111-14 98 bp Feature: gene Location: 1512-1772 bp Feature: domain Description: Phd Location: 1527-1710 bp Feature: domain Description: Phd Location: 1527-1710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PIN_Pae0151-like (cd09873), Phd (COG4118)

Seq: NCGZ01000060.1 Alphaproteobacteria bacterium 16-39-46 04302015_16_scaffold_790, whole genome shotgun sequence (15385 bp)
Overview 1 RT 1: 12257-15275 bp Neighborhood of RT #1 [12257, 15301] TPR_12 TPR_12 TPR_12 TPR_10 TPR_12 RVT_N RVT-GII Feature: gene Location: 12257-13237 bp Feature: domain Description: TPR_12 Location: 12284-12509 bp Feature: domain Description: TPR_12 Location: 12284-125 09 bp Feature: domain Description: TPR_12 Location: 12578-12761 bp Feature: domain Description: TPR_12 Location: 125 78-12761 bp Feature: domain Description: TPR_12 Location: 12788-12971 bp Feature: domain Description: TPR_12 Location: 12788-12971 bp Feature: domain Description: TPR_10 Location: 13043-13163 bp Feature: domain Description: TPR_10 Location: 13043-13163 bp Feature: gene Location: 13290-13607 bp Feature: domain Description: TPR_12 Location: 13335-13545 bp Feature: domain Description: TPR_12 Location: 13335 -135 45 bp Feature: gene Location: 14555-15301 bp Feature: RT Description: RVT_N Location: 14609-14846 bp Feature: RT Description: RVT_N Location: 14609-14846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14897-15275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14897-15 275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_12 (pfam13424), TPR_10 (pfam13374), RVT_N (pfam13655), RVT-GII