myRT

myRT report for GCA_002260545.1_ASM226054v1

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Seq: LGSU01001453.1 Hydrocoleum sp. CS-953, whole genome shotgun sequence (13947 bp)
Overview 1 RT 1: 11637-13947 bp Neighborhood of RT #1 [11637, 13947] RAYT RAYT RVT_N RVT-GII Feature: gene Location: 11637-11981 bp Feature: gene Location: 12162-12758 bp Feature: domain Description: RAYT Location: 12213-12432 bp Feature: domain Description: RAYT Location: 1 221 3-1 2432 bp Feature: domain Description: RAYT Location: 12525-12720 bp Feature: domain Description: RAYT Location: 1 2525-1 2720 bp Feature: gene Location: 13512-13947 bp Feature: RT Description: RVT_N Location: 13515-13623 bp Feature: RT Description: RVT_N Location: 1 351 5-1 3623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13671-13947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3671 -1 3947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), RVT_N (pfam13655), RVT-GII

Seq: LGSU01001228.1 Hydrocoleum sp. CS-953, whole genome shotgun sequence (8234 bp)
Overview 1 RT 1: 4601-6835 bp Neighborhood of RT #1 [4601, 6867] PRK05643 RVT_N RVT-GII RVT-GII GIIM McrA Feature: gene Location: 4601-4783 bp Feature: domain Description: PRK05643 Location: 4604-4754 bp Feature: domain Description: PRK05643 Location: 4604-4754 bp Feature: gene Location: 5168-5371 bp Feature: gene Location: 5356-6867 bp Feature: RT Description: RVT_N Location: 5392-5638 bp Feature: RT Description: RVT_N Location: 5392 -5638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5686-6109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5686-6109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6115-6280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6115-62 80 bp Feature: domain Description: GIIM Note: maturase Location: 6337-6490 bp Feature: domain Description: GIIM Note: maturase Location: 6337-6490 bp Feature: domain Description: McrA Location: 6553-6835 bp Feature: domain Description: McrA Location: 6553-6835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: LGSU01001494.1 Hydrocoleum sp. CS-953, whole genome shotgun sequence (25696 bp)
Overview 1 RT 1: 1-4072 bp Neighborhood of RT #1 [1, 4092] RVT_N RVT-GII GIIM Uma2 Feature: gene Location: 1-1576 bp Feature: RT Description: RVT_N Location: 61-304 bp Feature: RT Description: RVT_N Location: 61-3 04 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352-1042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 52-1042 bp Feature: domain Description: GIIM Note: maturase Location: 1114-1348 bp Feature: domain Description: GIIM Note: maturase Location: 1114-13 48 bp Feature: gene Location: 2039-2413 bp Feature: gene Location: 3487-4092 bp Feature: domain Description: Uma2 Location: 3520-4072 bp Feature: domain Description: Uma2 Location: 3 520-4072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Uma2 (pfam05685)

Seq: LGSU01001090.1 Hydrocoleum sp. CS-953, whole genome shotgun sequence (6681 bp)
Overview 1 RT 1: 2038-3851 bp Neighborhood of RT #1 [2038, 3883] CdsA RVT-GII Feature: gene Location: 2038-2904 bp Feature: domain Description: CdsA Location: 2047-2896 bp Feature: domain Description: CdsA Location: 204 7-2896 bp Feature: gene Location: 2917-3147 bp Feature: gene Location: 3446-3883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3491-3851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 91-3851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CdsA (COG0575), RVT-GII

Seq: LGSU01000652.1 Hydrocoleum sp. CS-953, whole genome shotgun sequence (4063 bp)
Overview 1 RT 1: 14-4063 bp Neighborhood of RT #1 [14, 4063] RVT-Retrons RNaseIII Feature: gene Location: 14-1441 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 560-1178 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 60-1178 bp Feature: gene Location: 2816-3481 bp Feature: domain Description: RNaseIII Location: 2837-3470 bp Feature: domain Description: RNaseIII Location: 2837-3470 bp Feature: gene Location: 3511-4063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, RNaseIII (TIGR02191)

Seq: LGSU01000536.1 Hydrocoleum sp. CS-953, whole genome shotgun sequence (3533 bp)
Overview 1 RT 1: 499-3238 bp Neighborhood of RT #1 [499, 3309] RVT-GII GIIM McrA DUF4388 PleD Feature: gene Location: 499-1908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502-1168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502-116 8 bp Feature: domain Description: GIIM Note: maturase Location: 1240-1474 bp Feature: domain Description: GIIM Note: maturase Location: 1240-1474 bp Feature: domain Description: McrA Location: 1558-1846 bp Feature: domain Description: McrA Location: 1558-1846 bp Feature: gene Location: 2086-3309 bp Feature: domain Description: DUF4388 Location: 2092-2611 bp Feature: domain Description: DUF4388 Location: 2092-26 11 bp Feature: domain Description: PleD Location: 2830-3238 bp Feature: domain Description: PleD Location: 2830-3238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4388 (pfam14332), PleD (COG3706), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: LGSU01000846.1 Hydrocoleum sp. CS-953, whole genome shotgun sequence (5024 bp)
Overview 1 RT 1: 814-4641 bp Neighborhood of RT #1 [814, 4641] RVT-GII GIIM McrA Feature: gene Location: 814-2172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 817-1405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 817 -1405 bp Feature: domain Description: GIIM Note: maturase Location: 1477-1711 bp Feature: domain Description: GIIM Note: maturase Location: 147 7 -17 11 bp Feature: domain Description: McrA Location: 1759-2080 bp Feature: domain Description: McrA Location: 17 59-2080 bp Feature: gene Location: 4129-4641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)