myRT

myRT report for GCA_002260625.1_VRE2016-194

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Seq: NLCT01000185.1 Enterococcus faecium strain VRE2016-194 2016_194_S43_R1_001_contig_36, whole genome shotgun sequence (4241 bp)
Overview 1 RT 1: 140-3839 bp Neighborhood of RT #1 [140, 3859] RVT-GII HNHc FtsK Feature: gene Location: 140-1999 bp Ori: OZH63147.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-1190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-1 1 90 bp Feature: domain Description: HNHc Note: nucleases Location: 1745-1883 bp Feature: domain Description: HNHc Note: nucleases Location: 1 745-1 883 bp Feature: gene Location: 2118-2348 bp Feature: gene Location: 2714-3859 bp Ori: OZH63149.1 Feature: domain Description: FtsK Location: 3374-3839 bp Feature: domain Description: FtsK Location: 3374-3839 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), FtsK (COG1674)

Seq: NLCT01000380.1 Enterococcus faecium strain VRE2016-194 2016_194_S43_R1_001_contig_181, whole genome shotgun sequence (11656 bp)
Overview 1 RT 1: 6914-11656 bp Neighborhood of RT #1 [6914, 11656] VirB4 RVT-GII HNHc Feature: gene Location: 6914-8608 bp Ori: OZH61282.1 Feature: domain Description: VirB4 Location: 7232-7916 bp Feature: domain Description: VirB4 Location: 72 32 -7916 bp Feature: gene Location: 8876-9109 bp Feature: gene Location: 9296-11173 bp Ori: OZH61284.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9611-10349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9611-10349 bp Feature: domain Description: HNHc Note: nucleases Location: 10907-11060 bp Feature: domain Description: HNHc Note: nucleases Location: 10907-11060 bp Feature: gene Location: 11361-11656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507)

Seq: NLCT01000317.1 Enterococcus faecium strain VRE2016-194 2016_194_S43_R1_001_contig_272, whole genome shotgun sequence (3351 bp)
Overview 1 RT 1: 162-3334 bp Neighborhood of RT #1 [162, 3351] RVT-AbiP2 HsdM Feature: gene Location: 162-1550 bp Ori: OZH61663.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 423-888 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 423 -888 bp Feature: gene Location: 1888-3351 bp Ori: OZH61662.1 Feature: domain Description: HsdM Location: 1909-3334 bp Feature: domain Description: HsdM Location: 1909-3 3 3 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286)

Seq: NLCT01000341.1 Enterococcus faecium strain VRE2016-194 2016_194_S43_R1_001_contig_156, whole genome shotgun sequence (7004 bp)
Overview 1 RT 1: 2880-6735 bp Neighborhood of RT #1 [2880, 6854] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc Feature: gene Location: 2880-4064 bp Ori: OZH61417.1 Feature: domain Description: HTH_XRE Location: 2910-3054 bp Feature: domain Description: HTH_XRE Location: 2910-3054 bp Feature: domain Description: Rol_Rep_N Location: 3087-3351 bp Feature: domain Description: Rol_Rep_N Location: 3087-3351 bp Feature: domain Description: Rep_trans Location: 3375-3987 bp Feature: domain Description: Rep_trans Location: 3375-3987 bp Feature: gene Location: 4061-4198 bp Ori: OZH61418.1 Feature: domain Description: DUF3789 Location: 4088-4181 bp Feature: domain Description: DUF3789 Location: 4 088-4 181 bp Feature: gene Location: 4944-6854 bp Ori: OZH61419.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5277-6015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5277-6015 bp Feature: domain Description: HNHc Note: nucleases Location: 6570-6735 bp Feature: domain Description: HNHc Note: nucleases Location: 6570-6735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), RVT-GII, HNHc (smart00507)