myRT

myRT report for GCA_002260825.1_VRE2016-78

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Seq: NLCS01000254.1 Enterococcus faecium strain VRE2016-78 2016_78_S41_R1_001_contig_58, whole genome shotgun sequence (7003 bp)
Overview 1 RT 1: 2880-6735 bp Neighborhood of RT #1 [2880, 6854] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc Feature: gene Location: 2880-4064 bp Ori: OZH65271.1 Feature: domain Description: HTH_XRE Location: 2910-3054 bp Feature: domain Description: HTH_XRE Location: 291 0-3054 bp Feature: domain Description: Rol_Rep_N Location: 3087-3351 bp Feature: domain Description: Rol_Rep_N Location: 3087-3351 bp Feature: domain Description: Rep_trans Location: 3375-3987 bp Feature: domain Description: Rep_trans Location: 3375-3987 bp Feature: gene Location: 4061-4198 bp Ori: OZH65272.1 Feature: domain Description: DUF3789 Location: 4088-4181 bp Feature: domain Description: DUF3789 Location: 4088-41 81 bp Feature: gene Location: 4944-6854 bp Ori: OZH65273.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5277-6015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5277-601 5 bp Feature: domain Description: HNHc Note: nucleases Location: 6570-6735 bp Feature: domain Description: HNHc Note: nucleases Location: 6570-6735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), RVT-GII, HNHc (smart00507)

Seq: NLCS01000306.1 Enterococcus faecium strain VRE2016-78 2016_78_S41_R1_001_contig_82, whole genome shotgun sequence (9969 bp)
Overview 1 RT 1: 5228-9969 bp Neighborhood of RT #1 [5228, 9969] VirB4 RVT-GII HNHc Feature: gene Location: 5228-6922 bp Ori: OZH64696.1 Feature: domain Description: VirB4 Location: 5546-6230 bp Feature: domain Description: VirB4 Location: 5546-62 30 bp Feature: gene Location: 7190-7423 bp Feature: gene Location: 7610-9487 bp Ori: OZH64698.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7925-8663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 792 5-8663 bp Feature: domain Description: HNHc Note: nucleases Location: 9221-9374 bp Feature: domain Description: HNHc Note: nucleases Location: 92 2 1-9374 bp Feature: gene Location: 9675-9969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507)

Seq: NLCS01000099.1 Enterococcus faecium strain VRE2016-78 2016_78_S41_R1_001_contig_131, whole genome shotgun sequence (4241 bp)
Overview 1 RT 1: 383-3986 bp Neighborhood of RT #1 [383, 4102] FtsK RVT-GII HNHc Feature: gene Location: 383-1528 bp Ori: OZH66246.1 Feature: domain Description: FtsK Location: 1043-1508 bp Feature: domain Description: FtsK Location: 1043 -1508 bp Feature: gene Location: 1894-2124 bp Feature: gene Location: 2243-4102 bp Ori: OZH66248.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2552-3293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2552-3 293 bp Feature: domain Description: HNHc Note: nucleases Location: 3848-3986 bp Feature: domain Description: HNHc Note: nucleases Location: 3 848-3 986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK (COG1674), RVT-GII, HNHc (smart00507)

Seq: NLCS01000257.1 Enterococcus faecium strain VRE2016-78 2016_78_S41_R1_001_contig_232, whole genome shotgun sequence (3475 bp)
Overview 1 RT 1: 13-2745 bp Neighborhood of RT #1 [13, 3407] Rve HsdM RVT-AbiP2 Feature: gene Location: 13-180 bp Feature: domain Description: Rve Location: 16-151 bp Feature: domain Description: Rve Location: 16-151 bp Feature: gene Location: 203-1681 bp Ori: OZH65263.1 Feature: domain Description: HsdM Location: 224-1649 bp Feature: domain Description: HsdM Location: 224 -164 9 bp Feature: gene Location: 2019-3407 bp Ori: OZH65264.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2280-2745 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2280-274 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), HsdM (COG0286), RVT-AbiP2