myRT

myRT report for GCA_002261115.1_ASM226111v1

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Seq: NDXL01000001.1 Streptomyces kasugaensis strain BCRC 12349 scaffold1, whole genome shotgun sequence (5071473 bp)
Overview 1 RT 1: 511608-516608 bp 2 RT 2: 2621038-2627952 bp 3 RT 3: 2643395-2647517 bp Neighborhood of RT #1 [511608, 516613] Acetyltransf_10 PRK09183 RVT-GII Intron_maturas2 HNHc GIIM COG3464 COG3464 Neighborhood of RT #2 [2621038, 2628119] PG_binding_1 PG_binding_1 RVT-GII GIIM DDE_Tnp_1_4 HTH_Tnp_4 Neighborhood of RT #3 [2643395, 2647561] COG3464 HTH_7 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 511608-512159 bp Feature: domain Description: Acetyltransf_10 Location: 511752-512079 bp Feature: domain Description: Acetyltransf_1 0 Location: 51 1 752-51 2079 bp Feature: gene Location: 512224-512472 bp Feature: domain Description: PRK09183 Location: 512233-512440 bp Feature: domain Description: PRK091 83 Location: 51 2233-51 2440 bp Feature: gene Location: 512642-514432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512906-513701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 2906-51 3701 bp Feature: domain Description: Intron_maturas2 Location: 513803-514037 bp Feature: domain Description: Intron_maturas2 Location: 51 3803-51 4037 bp Feature: domain Description: HNHc Note: nucleases Location: 514199-514388 bp Feature: domain Description: HNHc Note: nucleases Location: 51 41 99-51 4388 bp Feature: gene Location: 515019-515471 bp Feature: domain Description: GIIM Note: maturase Location: 515076-515274 bp Feature: domain Description: GIIM Note: maturase Location: 51 5076-51 5274 bp Feature: gene Location: 515468-516613 bp Feature: domain Description: COG3464 Location: 515474-515771 bp Feature: domain Description: COG3464 Location: 51 5474-51 5771 bp Feature: domain Description: COG3464 Location: 515882-516608 bp Feature: domain Description: COG3464 Location: 51 5882-51 6608 bp Feature: gene Location: 2621038-2621217 bp Feature: gene Location: 2621220-2621948 bp Feature: domain Description: PG_binding_1 Location: 2621472-2621544 bp Feature: domain Description: PG_binding_1 Location: 2621 472-2621 544 bp Feature: domain Description: PG_binding_1 Location: 2621829-2621937 bp Feature: domain Description: PG_binding_1 Location: 2621 829-2621 937 bp Feature: gene Location: 2623556-2624872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2623811-2624441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262381 1 -2624441 bp Feature: domain Description: GIIM Note: maturase Location: 2624528-2624738 bp Feature: domain Description: GIIM Note: maturase Location: 2624528-2624738 bp Feature: gene Location: 2625076-2626452 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2625091-2626441 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 2625091 -2626441 bp Feature: gene Location: 2627679-2628119 bp Feature: domain Description: HTH_Tnp_4 Location: 2627814-2627952 bp Feature: domain Description: HTH_Tnp_4 Location: 262781 4-2627952 bp Feature: gene Location: 2643395-2644357 bp Feature: gene Location: 2644357-2645457 bp Feature: domain Description: COG3464 Location: 2644537-2645182 bp Feature: domain Description: COG3464 Location: 2644537-26451 82 bp Feature: domain Description: HTH_7 Location: 2645278-2645404 bp Feature: domain Description: HTH_7 Location: 2645278-2645404 bp Feature: gene Location: 2645771-2647561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2646035-2646830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2646035-2646830 bp Feature: domain Description: Intron_maturas2 Location: 2646932-2647166 bp Feature: domain Description: Intron_maturas2 Location: 2646932-26471 66 bp Feature: domain Description: HNHc Note: nucleases Location: 2647328-2647517 bp Feature: domain Description: HNHc Note: nucleases Location: 2647328-264751 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_10 (pfam13673), PRK09183 (transposase/IS protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), GIIM (pfam08388), COG3464 (Transposase ), PG_binding_1 (pfam01471), DDE_Tnp_1_4 (pfam13701), HTH_Tnp_4 (pfam13613)
HTH_7 (pfam02796)

Seq: NDXL01000002.1 Streptomyces kasugaensis strain BCRC 12349 scaffold2, whole genome shotgun sequence (1748118 bp)
Overview 1 RT 1: 1340322-1344097 bp 2 RT 2: 1444742-1450983 bp 3 RT 3: 1564259-1568537 bp Neighborhood of RT #1 [1340322, 1344097] RVT-GII Intron_maturas2 Neighborhood of RT #2 [1444742, 1451048] UPF0066 RVT-GII Intron_maturas2 L1-EN Neighborhood of RT #3 [1564259, 1568537] T7SS_ESX_EspC HATPase_RsbW-like RVT-GII Intron_maturas2 Feature: gene Location: 1340322-1340750 bp Feature: gene Location: 1340747-1340923 bp Feature: gene Location: 1341448-1343250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1341709-1342525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1341709-1342 52 5 bp Feature: domain Description: Intron_maturas2 Location: 1342648-1342876 bp Feature: domain Description: Intron_maturas2 Location: 1342 648-1342 876 bp Feature: gene Location: 1343560-1343745 bp Feature: gene Location: 1343894-1344097 bp Feature: gene Location: 1444742-1445215 bp Feature: domain Description: UPF0066 Location: 1444766-1445126 bp Feature: domain Description: UPF0066 Location: 1444766-144512 6 bp Feature: gene Location: 1447047-1447244 bp Feature: gene Location: 1447769-1449571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1448030-1448846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1448030-1448846 bp Feature: domain Description: Intron_maturas2 Location: 1448969-1449197 bp Feature: domain Description: Intron_maturas2 Location: 1448969-1449197 bp Feature: gene Location: 1449950-1450381 bp Feature: gene Location: 1450839-1451048 bp Feature: domain Description: L1-EN Location: 1450860-1450983 bp Feature: domain Description: L1-EN Location: 1450860-1450983 bp Feature: gene Location: 1564259-1564549 bp Feature: domain Description: T7SS_ESX_EspC Location: 1564325-1564541 bp Feature: domain Description: T7SS_ESX_EspC Location: 156432 5-1564541 bp Feature: gene Location: 1564904-1565311 bp Feature: domain Description: HATPase_RsbW-like Location: 1565048-1565255 bp Feature: domain Description: HATPase_RsbW-like Location: 1565048-15652 55 bp Feature: gene Location: 1565304-1567106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1565565-1566381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1565565-1566381 bp Feature: domain Description: Intron_maturas2 Location: 1566504-1566732 bp Feature: domain Description: Intron_maturas2 Location: 1566504-1566732 bp Feature: gene Location: 1567867-1568175 bp Feature: gene Location: 1568193-1568537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), UPF0066 (pfam01980), L1-EN (cd09076), T7SS_ESX_EspC (pfam10824), HATPase_RsbW-like (cd16936)