myRT

myRT report for GCA_002261575.1_ASM226157v1

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Seq: NLFF01000053.1 Klebsiella pneumoniae strain L84 NODE_61_length_1892_cov_745.358, whole genome shotgun sequence (1892 bp)
Overview 1 RT 1: 1-1442 bp Neighborhood of RT #1 [1, 1834] RVT-GII Feature: gene Location: 1-217 bp Feature: gene Location: 350-1834 bp Ori: OZJ17727.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1 442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NLFF01000034.1 Klebsiella pneumoniae strain L84 NODE_34_length_20624_cov_181.984, whole genome shotgun sequence (20624 bp)
Overview 1 RT 1: 12777-16412 bp Neighborhood of RT #1 [12777, 16412] Zn_Tnp_IS1 HTH_Tnp_IS1 PHA02517 RVT-GII GIIM Feature: gene Location: 12777-13474 bp Feature: domain Description: Zn_Tnp_IS1 Location: 12783-12885 bp Feature: domain Description: Zn_Tnp_IS1 Location: 12 783-12 885 bp Feature: domain Description: HTH_Tnp_IS1 Location: 12906-13041 bp Feature: domain Description: HTH_Tnp_IS1 Location: 12 906-13041 bp Feature: gene Location: 13898-14077 bp Feature: domain Description: PHA02517 Location: 13901-14078 bp Feature: domain Description: PHA02 517 Location: 13901-14078 bp Feature: gene Location: 14158-15681 bp Ori: OZJ17908.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14431-15163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14431-15163 bp Feature: domain Description: GIIM Note: maturase Location: 15238-15436 bp Feature: domain Description: GIIM Note: maturase Location: 152 38-15436 bp Feature: gene Location: 15752-16060 bp Feature: gene Location: 15975-16412 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NLFF01000028.1 Klebsiella pneumoniae strain L84 NODE_28_length_28970_cov_67.6971, whole genome shotgun sequence (28970 bp)
Overview 1 RT 1: 249-3324 bp Neighborhood of RT #1 [249, 3329] PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 249-467 bp Ori: OZJ18067.1 Feature: domain Description: PRK09678 Location: 252-450 bp Feature: domain Description: PRK09678 Location: 252-450 bp Feature: gene Location: 871-1644 bp Ori: OZJ18068.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1006-1459 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1006-1459 bp Feature: gene Location: 2260-2742 bp Ori: OZJ18069.1 Feature: domain Description: SmpB Location: 2290-2734 bp Feature: domain Description: SmpB Location: 2290-273 4 bp Feature: gene Location: 2853-3329 bp Ori: OZJ18070.1 Feature: domain Description: PRK10724 Location: 2859-3324 bp Feature: domain Description: PRK10724 Location: 2859-3 3 24 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)