myRT

myRT report for GCA_002262335.1_ASM226233v1

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Seq: NLDU01000044.1 Klebsiella pneumoniae strain L374 L374_ctg044, whole genome shotgun sequence (3218204 bp)
Overview 1 RT 1: 423831-428502 bp 2 RT 2: 1167698-1171750 bp 3 RT 3: 1416111-1420147 bp 4 RT 4: 2595747-2601479 bp 5 RT 5: 2618893-2621756 bp Neighborhood of RT #1 [423831, 428552] umuC PRK10276 RVT-GII int Neighborhood of RT #2 [1167698, 1171776] RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #3 [1416111, 1421001] DinI RVT-GII Phage_GPA Neighborhood of RT #4 [2595747, 2602009] AAA_15 RVT-Retrons STKc_PknB_like Neighborhood of RT #5 [2618893, 2621773] PRK10016 RVT-GII PRK10276 Feature: gene Location: 423831-425096 bp Feature: domain Description: umuC Location: 423834-425094 bp Feature: domain Description: umuC Location: 423834-425094 bp Feature: gene Location: 425098-425517 bp Feature: domain Description: PRK10276 Location: 425101-425512 bp Feature: domain Description: PRK1 0276 Location: 4251 01 -42551 2 bp Feature: gene Location: 425597-427081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425999-426689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425999-426689 bp Feature: gene Location: 427081-427332 bp Feature: gene Location: 427500-428552 bp Feature: domain Description: int Location: 427503-428502 bp Feature: domain Description: int Location: 427503-428502 bp Feature: gene Location: 1167698-1167955 bp Feature: gene Location: 1168108-1168359 bp Feature: gene Location: 1168359-1169843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1168761-1169451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 68761 -1 1 69451 bp Feature: gene Location: 1169942-1170886 bp Feature: gene Location: 1170898-1171776 bp Feature: domain Description: Phage_CI_repr Location: 1170925-1171108 bp Feature: domain Description: Phage_CI_repr Location: 1 1 70925-1 1 71 1 08 bp Feature: domain Description: Phage_CI_repr Location: 1171237-1171429 bp Feature: domain Description: Phage_CI_repr Location: 1 1 71 237-1 1 71 429 bp Feature: domain Description: Phage_CI_C Location: 1171456-1171750 bp Feature: domain Description: Phage_CI_C Location: 1 1 71 456-1 1 71 750 bp Feature: gene Location: 1416111-1416344 bp Feature: domain Description: DinI Location: 1416156-1416339 bp Feature: domain Description: DinI Location: 1 41 61 56-1 41 6339 bp Feature: gene Location: 1416356-1416544 bp Feature: gene Location: 1416652-1418136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1417054-1417744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 7054-1 41 7744 bp Feature: gene Location: 1418136-1418387 bp Feature: gene Location: 1418617-1421001 bp Feature: domain Description: Phage_GPA Location: 1419181-1420147 bp Feature: domain Description: Phage_GPA Location: 1 41 91 81 -1 4201 47 bp Feature: gene Location: 2595747-2595977 bp Feature: gene Location: 2596856-2599132 bp Feature: domain Description: AAA_15 Location: 2596889-2597897 bp Feature: domain Description: AAA_1 5 Location: 2596889-2597897 bp Feature: gene Location: 2599247-2600347 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2599430-2599958 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2599430-2599958 bp Feature: gene Location: 2600594-2600836 bp Feature: gene Location: 2600906-2602009 bp Feature: domain Description: STKc_PknB_like Location: 2601038-2601479 bp Feature: domain Description: STKc_PknB_like Location: 2601 038-2601 479 bp Feature: gene Location: 2618893-2619366 bp Feature: domain Description: PRK10016 Location: 2618896-2619355 bp Feature: domain Description: PRK1 001 6 Location: 261 8896-261 9355 bp Feature: gene Location: 2619275-2619502 bp Feature: gene Location: 2619448-2620932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2619850-2620540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 9850-2620540 bp Feature: gene Location: 2620932-2621183 bp Feature: gene Location: 2621342-2621773 bp Feature: domain Description: PRK10276 Location: 2621393-2621756 bp Feature: domain Description: PRK1 0276 Location: 2621 393-2621 756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), DinI (pfam06183), Phage_GPA (pfam05840), AAA_15 (pfam13175), RVT-Retrons
STKc_PknB_like (cd14014), PRK10016 (DNA gyrase inhibitor SbmC)

Seq: NLDU01000024.1 Klebsiella pneumoniae strain L374 L374_ctg024, whole genome shotgun sequence (1894 bp)
Overview 1 RT 1: 61-1796 bp Neighborhood of RT #1 [61, 1796] RVT-GII Feature: gene Location: 61-1545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1153 bp Feature: gene Location: 1545-1796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NLDU01000009.1 Klebsiella pneumoniae strain L374 L374_ctg009, whole genome shotgun sequence (13916 bp)
Overview 1 RT 1: 2884-6487 bp Neighborhood of RT #1 [2884, 6612] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2884-3141 bp Feature: gene Location: 3109-3284 bp Feature: gene Location: 4021-5688 bp Feature: RT Description: RVT_N Location: 4069-4306 bp Feature: RT Description: RVT_N Location: 4069-43 06 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4357-4999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 57-4999 bp Feature: domain Description: GIIM Note: maturase Location: 5050-5284 bp Feature: domain Description: GIIM Note: maturase Location: 5050-5284 bp Feature: domain Description: HNHc Note: nucleases Location: 5494-5653 bp Feature: domain Description: HNHc Note: nucleases Location: 5494-5653 bp Feature: gene Location: 6002-6193 bp Feature: gene Location: 6190-6612 bp Feature: domain Description: DUF1380 Location: 6193-6487 bp Feature: domain Description: DUF13 80 Location: 6193 -6487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: NLDU01000075.1 Klebsiella pneumoniae strain L374 L374_ctg075, whole genome shotgun sequence (1275610 bp)
Overview 1 RT 1: 1209995-1213389 bp Neighborhood of RT #1 [1209995, 1213430] RVT-GII XerC Feature: gene Location: 1209995-1210198 bp Feature: gene Location: 1210191-1210529 bp Feature: gene Location: 1210626-1212110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1211028-1211718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1211028-1211718 bp Feature: gene Location: 1212110-1212361 bp Feature: gene Location: 1213008-1213430 bp Feature: domain Description: XerC Location: 1213044-1213389 bp Feature: domain Description: XerC Location: 121304 4 -1213389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, XerC (COG4973)