myRT

myRT report for GCA_002262855.1_ASM226285v1

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Seq: NLCW01000011.1 Klebsiella pneumoniae strain L117 L117_ctg011, whole genome shotgun sequence (123440 bp)
Overview 1 RT 1: 17516-23778 bp Neighborhood of RT #1 [17516, 23778] STKc_PknB_like RVT-Retrons AAA_15 Feature: gene Location: 17516-18619 bp Feature: domain Description: STKc_PknB_like Location: 17648-18089 bp Feature: domain Description: STKc_PknB_like Location: 1 7648-1 8089 bp Feature: gene Location: 18689-18931 bp Feature: gene Location: 19178-20278 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19361-19889 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 9361 -1 9889 bp Feature: gene Location: 20393-22669 bp Feature: domain Description: AAA_15 Location: 20426-21434 bp Feature: domain Description: AAA_1 5 Location: 20426-21 434 bp Feature: gene Location: 23548-23778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175)

Seq: NLCW01000060.1 Klebsiella pneumoniae strain L117 L117_ctg060, whole genome shotgun sequence (13940 bp)
Overview 1 RT 1: 2892-6495 bp Neighborhood of RT #1 [2892, 6620] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2892-3149 bp Feature: gene Location: 3117-3292 bp Feature: gene Location: 4029-5696 bp Feature: RT Description: RVT_N Location: 4077-4314 bp Feature: RT Description: RVT_N Location: 4077-4314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4365-5007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4365-5007 bp Feature: domain Description: GIIM Note: maturase Location: 5058-5292 bp Feature: domain Description: GIIM Note: maturase Location: 5058-52 92 bp Feature: domain Description: HNHc Note: nucleases Location: 5502-5661 bp Feature: domain Description: HNHc Note: nucleases Location: 5502 -5661 bp Feature: gene Location: 6010-6201 bp Feature: gene Location: 6198-6620 bp Feature: domain Description: DUF1380 Location: 6201-6495 bp Feature: domain Description: DUF1380 Location: 62 01-6495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: NLCW01000008.1 Klebsiella pneumoniae strain L117 L117_ctg008, whole genome shotgun sequence (1892 bp)
Overview 1 RT 1: 59-1794 bp Neighborhood of RT #1 [59, 1794] RVT-GII Feature: gene Location: 59-1543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1151 bp Feature: gene Location: 1543-1794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII