myRT

myRT report for GCA_002263195.1_ASM226319v1

Download annotations/find similar RTs

Seq: NMZI01000002.1 Enterococcus faecium strain 9-F-6 unitig1_circularized, whole genome shotgun sequence (268160 bp)
Overview 1 RT 1: 61105-65256 bp 2 RT 2: 188018-193878 bp Neighborhood of RT #1 [61105, 65351] PRK07726 RVT-GII HNHc PRK07726 PRK07726 Neighborhood of RT #2 [188018, 193901] Omega_Repress PRK07726 RVT-GII HNHc PRK07726 PinE Feature: gene Location: 61105-61453 bp Feature: gene Location: 61453-61815 bp Ori: OZN12830.1 Feature: domain Description: PRK07726 Location: 61462-61795 bp Feature: domain Description: PRK07726 Location: 61 462-61 795 bp Feature: gene Location: 62552-64438 bp Ori: OZN12831.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62867-63605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62867-63605 bp Feature: domain Description: HNHc Note: nucleases Location: 64154-64322 bp Feature: domain Description: HNHc Note: nucleases Location: 641 54-64322 bp Feature: gene Location: 64571-65008 bp Feature: domain Description: PRK07726 Location: 64583-64973 bp Feature: domain Description: PRK07726 Location: 64583-64973 bp Feature: gene Location: 65019-65351 bp Ori: OZN12832.1 Feature: domain Description: PRK07726 Location: 65025-65256 bp Feature: domain Description: PRK07726 Location: 65025-65256 bp Feature: gene Location: 188018-188257 bp Ori: OZN12946.1 Feature: domain Description: Omega_Repress Location: 188024-188231 bp Feature: domain Description: Omega_Repress Location: 1 88024-1 88231 bp Feature: gene Location: 188370-190046 bp Ori: OZN13008.1 Feature: domain Description: PRK07726 Location: 188376-189897 bp Feature: domain Description: PRK07726 Location: 1 88376-1 89897 bp Feature: gene Location: 190299-192185 bp Ori: OZN12947.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190614-191352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9061 4-1 91 352 bp Feature: domain Description: HNHc Note: nucleases Location: 191901-192069 bp Feature: domain Description: HNHc Note: nucleases Location: 1 91 901 -1 92069 bp Feature: gene Location: 192922-193284 bp Ori: OZN12948.1 Feature: domain Description: PRK07726 Location: 192931-193264 bp Feature: domain Description: PRK07726 Location: 1 92931 -1 93264 bp Feature: gene Location: 193284-193901 bp Ori: OZN12949.1 Feature: domain Description: PinE Location: 193287-193878 bp Feature: domain Description: PinE Location: 1 93287-1 93878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07726 (DNA topoisomerase 3), RVT-GII, HNHc (smart00507), Omega_Repress (pfam07764), PinE (COG1961)

Seq: NMZI01000001.1 Enterococcus faecium strain 9-F-6 unitig0_circularized, whole genome shotgun sequence (2754338 bp)
Overview 1 RT 1: 248370-253373 bp 2 RT 2: 1093906-1103381 bp 3 RT 3: 2663622-2669291 bp Neighborhood of RT #1 [248370, 253387] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Neighborhood of RT #2 [1093906, 1103389] P-type_ATPase_Ca_prok P-type_ATPase_SERCA UbiE RVT-GII GIIM HMG-CoA-S_prok thiolase HMG-CoA_reductase_classII Neighborhood of RT #3 [2663622, 2669291] MFS_MefA_like COG2865 RVT-AbiP2 HTH_XRE Feature: gene Location: 248370-248523 bp Feature: gene Location: 248546-249751 bp Ori: OZN13251.1 Feature: domain Description: HTH_XRE Location: 248591-248735 bp Feature: domain Description: HTH_XRE Location: 2 48591-2 48735 bp Feature: domain Description: Rol_Rep_N Location: 248762-249029 bp Feature: domain Description: Rol_Rep_N Location: 2 48762 -2 4902 9 bp Feature: domain Description: Rep_trans Location: 249053-249662 bp Feature: domain Description: Rep_trans Location: 2 49053-2 49662 bp Feature: gene Location: 250535-252445 bp Ori: OZN13252.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250868-251606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 50868-2 51606 bp Feature: domain Description: HNHc Note: nucleases Location: 252161-252326 bp Feature: domain Description: HNHc Note: nucleases Location: 2 52 161-2 52 32 6 bp Feature: gene Location: 252549-252773 bp Feature: gene Location: 252890-253387 bp Ori: OZN13254.1 Feature: domain Description: ArdA Location: 252908-253373 bp Feature: domain Description: ArdA Location: 2 52 908-2 53373 bp Feature: gene Location: 1093906-1096572 bp Ori: OZN14013.1 Feature: domain Description: P-type_ATPase_Ca_prok Location: 1093993-1096150 bp Feature: domain Description: P-type_ATPase_Ca_prok Location: 1093993-1096150 bp Feature: domain Description: P-type_ATPase_SERCA Location: 1096273-1096546 bp Feature: domain Description: P-type_ATPase_SERCA Location: 10962 73-1096546 bp Feature: gene Location: 1096936-1097688 bp Ori: OZN14014.1 Feature: domain Description: UbiE Location: 1097038-1097263 bp Feature: domain Description: UbiE Location: 1097038-10972 63 bp Feature: gene Location: 1098141-1099529 bp Ori: OZN14015.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1098462-1099077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1098462 -1099077 bp Feature: domain Description: GIIM Note: maturase Location: 1099134-1099350 bp Feature: domain Description: GIIM Note: maturase Location: 1099134-1099350 bp Feature: gene Location: 1099609-1100763 bp Ori: OZN14016.1 Feature: domain Description: HMG-CoA-S_prok Location: 1099618-1100755 bp Feature: domain Description: HMG-CoA-S_prok Location: 1099618-1100755 bp Feature: gene Location: 1100948-1103389 bp Ori: OZN14017.1 Feature: domain Description: thiolase Location: 1100963-1102103 bp Feature: domain Description: thiolase Location: 1100963-1102 103 bp Feature: domain Description: HMG-CoA_reductase_classII Location: 1102142-1103381 bp Feature: domain Description: HMG-CoA_reductase_classII Location: 1102 142 -1103381 bp Feature: gene Location: 2663622-2663945 bp Ori: OZN15418.1 Feature: domain Description: MFS_MefA_like Location: 2663631-2663841 bp Feature: domain Description: MFS_MefA_like Location: 2 663631-2 663841 bp Feature: gene Location: 2664906-2666354 bp Ori: OZN15419.1 Feature: domain Description: COG2865 Location: 2664912-2666310 bp Feature: domain Description: COG2 865 Location: 2 664912 -2 666310 bp Feature: gene Location: 2666500-2667996 bp Ori: OZN15573.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2666908-2667364 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 666908-2 667364 bp Feature: gene Location: 2668168-2668413 bp Ori: OZN15420.1 Feature: domain Description: HTH_XRE Location: 2668219-2668405 bp Feature: domain Description: HTH_XRE Location: 2 6682 19-2 668405 bp Feature: gene Location: 2668518-2669291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275), P-type_ATPase_Ca_prok (cd02089), P-type_ATPase_SERCA (cd02083), UbiE (COG2226), GIIM (pfam08388)
HMG-CoA-S_prok (TIGR01835), thiolase (PRK06158), HMG-CoA_reductase_classII (cd00644), MFS_MefA_like (cd06173), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-AbiP2

Seq: NMZI01000004.1 Enterococcus faecium strain 9-F-6 unitig4_circularized, whole genome shotgun sequence (41652 bp)
Overview 1 RT 1: 21194-27302 bp Neighborhood of RT #1 [21194, 27331] PinE Tra8 RVT-AbiP2 HsdM Rve Feature: gene Location: 21194-21757 bp Ori: OZN12705.1 Feature: domain Description: PinE Location: 21206-21752 bp Feature: domain Description: PinE Location: 21206-21752 bp Feature: gene Location: 22400-23353 bp Ori: OZN12706.1 Feature: domain Description: Tra8 Location: 22403-23330 bp Feature: domain Description: Tra8 Location: 22403 -23 3 3 0 bp Feature: gene Location: 23418-24806 bp Ori: OZN12726.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 23679-24144 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 23 679-24144 bp Feature: gene Location: 25144-26622 bp Ori: OZN12707.1 Feature: domain Description: HsdM Location: 25165-26590 bp Feature: domain Description: HsdM Location: 25165-26590 bp Feature: gene Location: 26645-27331 bp Ori: OZN12708.1 Feature: domain Description: Rve Location: 26654-27302 bp Feature: domain Description: Rve Location: 26654-273 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286), Rve (COG3316)