myRT

myRT report for GCA_002263695.1_ASM226369v1

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Seq: NNAA01000109.1 Escherichia coli strain WW9 NODE_109_length_9494_cov_13.7737, whole genome shotgun sequence (9494 bp)
Overview 1 RT 1: 1-4422 bp Neighborhood of RT #1 [1, 5450] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C YeeA YeeA Feature: gene Location: 1-369 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-370 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-370 bp Feature: gene Location: 282-863 bp Feature: gene Location: 987-2114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1083-1737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 083-1 737 bp Feature: domain Description: GIIM Note: maturase Location: 1815-2040 bp Feature: domain Description: GIIM Note: maturase Location: 1 81 5-2040 bp Feature: gene Location: 2197-2319 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2242-2317 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2242-231 7 bp Feature: gene Location: 2688-5450 bp Feature: domain Description: YeeA Location: 3504-3807 bp Feature: domain Description: YeeA Location: 3504-3807 bp Feature: domain Description: YeeA Location: 4125-4422 bp Feature: domain Description: YeeA Location: 41 25-4422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), YeeA (COG1002), RVT-GII, GIIM (pfam08388)

Seq: NNAA01000223.1 Escherichia coli strain WW9 NODE_223_length_1364_cov_125.475, whole genome shotgun sequence (1364 bp)
Overview 1 RT 1: 93-1119 bp Neighborhood of RT #1 [93, 1364] RVT-GII GIIM Feature: gene Location: 93-1364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114-846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114-846 bp Feature: domain Description: GIIM Note: maturase Location: 921-1119 bp Feature: domain Description: GIIM Note: maturase Location: 92 1-1119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NNAA01000062.1 Escherichia coli strain WW9 NODE_62_length_28323_cov_15.5723, whole genome shotgun sequence (28323 bp)
Overview 1 RT 1: 16309-20834 bp Neighborhood of RT #1 [16309, 21673] YeeP RVT-GII HTH_17 PLDc_N_DEXD_c DEXDc_RapA SF2_C_SNF Feature: gene Location: 16309-17184 bp Feature: domain Description: YeeP Location: 16324-17182 bp Feature: domain Description: YeeP Location: 163 24-17182 bp Feature: gene Location: 17410-17652 bp Feature: gene Location: 17642-17924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17651-17738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17651-1773 8 bp Feature: gene Location: 18213-18392 bp Feature: domain Description: HTH_17 Location: 18231-18375 bp Feature: domain Description: HTH_17 Location: 1823 1-183 75 bp Feature: gene Location: 18407-21673 bp Feature: domain Description: PLDc_N_DEXD_c Location: 18422-18833 bp Feature: domain Description: PLDc_N_DEXD_c Location: 18422-1883 3 bp Feature: domain Description: DEXDc_RapA Location: 19094-19661 bp Feature: domain Description: DEXDc_RapA Location: 19094-19661 bp Feature: domain Description: SF2_C_SNF Location: 20240-20834 bp Feature: domain Description: SF2_C_SNF Location: 20240-2083 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-GII, HTH_17 (pfam12728), PLDc_N_DEXD_c (cd10311), DEXDc_RapA (cd18011), SF2_C_SNF (cd18793)