myRT

myRT report for GCA_002263705.1_ASM226370v1

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Seq: NNAD01000164.1 Escherichia coli strain WW669 NODE_164_length_2272_cov_77.9066, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1936 bp Neighborhood of RT #1 [1, 2181] RVT-GII GIIM Feature: gene Location: 1-364 bp Feature: gene Location: 279-587 bp Feature: gene Location: 658-2181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931 -1 663 bp Feature: domain Description: GIIM Note: maturase Location: 1738-1936 bp Feature: domain Description: GIIM Note: maturase Location: 1 738-1 936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NNAD01000135.1 Escherichia coli strain WW669 NODE_135_length_4112_cov_34.7857, whole genome shotgun sequence (4112 bp)
Overview 1 RT 1: 81-3426 bp Neighborhood of RT #1 [81, 3464] PRK10276 RVT-GII InsA Rep_3 Feature: gene Location: 81-410 bp Feature: domain Description: PRK10276 Location: 84-405 bp Feature: domain Description: PRK102 76 Location: 84-405 bp Feature: gene Location: 563-814 bp Feature: gene Location: 814-2298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1216-1906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 16-1906 bp Feature: gene Location: 2449-3146 bp Feature: domain Description: InsA Location: 2455-2722 bp Feature: domain Description: InsA Location: 2 455-2 72 2 bp Feature: gene Location: 3156-3464 bp Feature: domain Description: Rep_3 Location: 3162-3426 bp Feature: domain Description: Rep_3 Location: 3162 -342 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsA (COG3677), Rep_3 (pfam01051), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: NNAD01000052.1 Escherichia coli strain WW669 NODE_52_length_35000_cov_21.0354, whole genome shotgun sequence (35000 bp)
Overview 1 RT 1: 16243-20768 bp Neighborhood of RT #1 [16243, 21607] YeeP RVT-GII HTH_17 PLDc_N_DEXD_c DEXDc_RapA SF2_C_SNF Feature: gene Location: 16243-17118 bp Feature: domain Description: YeeP Location: 16258-17116 bp Feature: domain Description: YeeP Location: 16258-17116 bp Feature: gene Location: 17344-17586 bp Feature: gene Location: 17576-17858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17585-17672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17585-17672 bp Feature: gene Location: 18147-18326 bp Feature: domain Description: HTH_17 Location: 18165-18309 bp Feature: domain Description: HTH_17 Location: 18165-183 09 bp Feature: gene Location: 18341-21607 bp Feature: domain Description: PLDc_N_DEXD_c Location: 18356-18767 bp Feature: domain Description: PLDc_N_DEXD_c Location: 183 56-18767 bp Feature: domain Description: DEXDc_RapA Location: 19028-19595 bp Feature: domain Description: DEXDc_RapA Location: 19028-19595 bp Feature: domain Description: SF2_C_SNF Location: 20174-20768 bp Feature: domain Description: SF2_C_SNF Location: 20174-20768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-GII, HTH_17 (pfam12728), PLDc_N_DEXD_c (cd10311), DEXDc_RapA (cd18011), SF2_C_SNF (cd18793)

Seq: NNAD01000054.1 Escherichia coli strain WW669 NODE_54_length_33812_cov_13.592, whole genome shotgun sequence (33812 bp)
Overview 1 RT 1: 27859-32929 bp Neighborhood of RT #1 [27859, 32929] CoiA PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 27859-28860 bp Feature: domain Description: CoiA Location: 27940-28078 bp Feature: domain Description: CoiA Location: 2794 0-28078 bp Feature: gene Location: 29670-31172 bp Feature: domain Description: PRK13889 Location: 29673-30255 bp Feature: domain Description: PRK13889 Location: 29673-30255 bp Feature: gene Location: 31249-32349 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31390-31942 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31390-3194 2 bp Feature: gene Location: 32342-32623 bp Feature: domain Description: HTH_XRE Location: 32357-32522 bp Feature: domain Description: HTH_XRE Location: 32357-32522 bp Feature: gene Location: 32714-32929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CoiA (pfam06054), PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)