myRT

myRT report for GCA_002263745.1_ASM226374v1

Download annotations/find similar RTs

Seq: NNAB01000048.1 Escherichia coli strain WW69 NODE_48_length_35045_cov_45.9846, whole genome shotgun sequence (35045 bp)
Overview 1 RT 1: 16288-20813 bp Neighborhood of RT #1 [16288, 21652] YeeP RVT-GII HTH_17 PLDc_N_DEXD_c DEXDc_RapA SF2_C_SNF Feature: gene Location: 16288-17163 bp Feature: domain Description: YeeP Location: 16303-17161 bp Feature: domain Description: YeeP Location: 1 6303-1 71 61 bp Feature: gene Location: 17389-17631 bp Feature: gene Location: 17621-17903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17630-17717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7630-1 771 7 bp Feature: gene Location: 18192-18371 bp Feature: domain Description: HTH_17 Location: 18210-18354 bp Feature: domain Description: HTH_1 7 Location: 1 821 0-1 8354 bp Feature: gene Location: 18386-21652 bp Feature: domain Description: PLDc_N_DEXD_c Location: 18401-18812 bp Feature: domain Description: PLDc_N_DEXD_c Location: 1 8401 -1 881 2 bp Feature: domain Description: DEXDc_RapA Location: 19073-19640 bp Feature: domain Description: DEXDc_RapA Location: 1 9073-1 9640 bp Feature: domain Description: SF2_C_SNF Location: 20219-20813 bp Feature: domain Description: SF2_C_SNF Location: 2021 9-2081 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-GII, HTH_17 (pfam12728), PLDc_N_DEXD_c (cd10311), DEXDc_RapA (cd18011), SF2_C_SNF (cd18793)

Seq: NNAB01000146.1 Escherichia coli strain WW69 NODE_146_length_2971_cov_37.7466, whole genome shotgun sequence (2971 bp)
Overview 1 RT 1: 81-2722 bp Neighborhood of RT #1 [81, 2971] PRK10276 RVT-GII InsA Feature: gene Location: 81-410 bp Feature: domain Description: PRK10276 Location: 84-405 bp Feature: domain Description: PRK102 76 Location: 84-405 bp Feature: gene Location: 563-814 bp Feature: gene Location: 814-2298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1216-1906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 16-1906 bp Feature: gene Location: 2449-2971 bp Feature: domain Description: InsA Location: 2455-2722 bp Feature: domain Description: InsA Location: 2 455-2 72 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsA (COG3677), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: NNAB01000163.1 Escherichia coli strain WW69 NODE_163_length_2275_cov_178.907, whole genome shotgun sequence (2275 bp)
Overview 1 RT 1: 5-1939 bp Neighborhood of RT #1 [5, 2184] RVT-GII GIIM Feature: gene Location: 5-367 bp Feature: gene Location: 282-590 bp Feature: gene Location: 661-2184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 4-1666 bp Feature: domain Description: GIIM Note: maturase Location: 1741-1939 bp Feature: domain Description: GIIM Note: maturase Location: 1741-193 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)