myRT

myRT report for GCA_002263755.1_ASM226375v1

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Seq: NNAC01000145.1 Escherichia coli strain WW679 NODE_145_length_3070_cov_36.6515, whole genome shotgun sequence (3070 bp)
Overview 1 RT 1: 1-2187 bp Neighborhood of RT #1 [1, 2187] RVT-Retrons HTH_XRE Feature: gene Location: 1-230 bp Feature: gene Location: 227-430 bp Feature: gene Location: 507-1607 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 648-1200 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 648-1 200 bp Feature: gene Location: 1600-1881 bp Feature: domain Description: HTH_XRE Location: 1615-1780 bp Feature: domain Description: HTH_XRE Location: 1 61 5-1 780 bp Feature: gene Location: 1972-2187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: NNAC01000159.1 Escherichia coli strain WW679 NODE_159_length_2362_cov_17.9723, whole genome shotgun sequence (2362 bp)
Overview 1 RT 1: 1-2131 bp Neighborhood of RT #1 [1, 2131] InsA RVT-GII Feature: gene Location: 1-245 bp Feature: domain Description: InsA Location: 7-241 bp Feature: domain Description: InsA Location: 7-2 41 bp Feature: gene Location: 396-1880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 798-1488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 798-1488 bp Feature: gene Location: 1880-2131 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsA (COG3677), RVT-GII

Seq: NNAC01000163.1 Escherichia coli strain WW679 NODE_163_length_2272_cov_82.5115, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1936 bp Neighborhood of RT #1 [1, 2181] RVT-GII GIIM Feature: gene Location: 1-364 bp Feature: gene Location: 279-587 bp Feature: gene Location: 658-2181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 1-1663 bp Feature: domain Description: GIIM Note: maturase Location: 1738-1936 bp Feature: domain Description: GIIM Note: maturase Location: 173 8-193 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NNAC01000049.1 Escherichia coli strain WW679 NODE_49_length_35066_cov_22.923, whole genome shotgun sequence (35066 bp)
Overview 1 RT 1: 16308-20833 bp Neighborhood of RT #1 [16308, 21672] YeeP RVT-GII HTH_17 PLDc_N_DEXD_c DEXDc_RapA SF2_C_SNF Feature: gene Location: 16308-17183 bp Feature: domain Description: YeeP Location: 16323-17181 bp Feature: domain Description: YeeP Location: 16323-17181 bp Feature: gene Location: 17409-17651 bp Feature: gene Location: 17641-17923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17650-17737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17650-17737 bp Feature: gene Location: 18212-18391 bp Feature: domain Description: HTH_17 Location: 18230-18374 bp Feature: domain Description: HTH_17 Location: 18230-18374 bp Feature: gene Location: 18406-21672 bp Feature: domain Description: PLDc_N_DEXD_c Location: 18421-18832 bp Feature: domain Description: PLDc_N_DEXD_c Location: 184 21-18832 bp Feature: domain Description: DEXDc_RapA Location: 19093-19660 bp Feature: domain Description: DEXDc_RapA Location: 19093-19660 bp Feature: domain Description: SF2_C_SNF Location: 20239-20833 bp Feature: domain Description: SF2_C_SNF Location: 20239-20833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-GII, HTH_17 (pfam12728), PLDc_N_DEXD_c (cd10311), DEXDc_RapA (cd18011), SF2_C_SNF (cd18793)