myRT

myRT report for GCA_002263835.1_ASM226383v1

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Seq: NNAE01000050.1 Escherichia coli strain WW63 NODE_50_length_33808_cov_14.5101, whole genome shotgun sequence (33808 bp)
Overview 1 RT 1: 27856-32925 bp Neighborhood of RT #1 [27856, 32925] CoiA PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 27856-28857 bp Feature: domain Description: CoiA Location: 27937-28075 bp Feature: domain Description: CoiA Location: 27937-28075 bp Feature: gene Location: 29666-31168 bp Feature: domain Description: PRK13889 Location: 29669-30251 bp Feature: domain Description: PRK1 3889 Location: 29669-30251 bp Feature: gene Location: 31245-32345 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31386-31938 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 386-31 938 bp Feature: gene Location: 32338-32619 bp Feature: domain Description: HTH_XRE Location: 32353-32518 bp Feature: domain Description: HTH_XRE Location: 32353-3251 8 bp Feature: gene Location: 32710-32925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CoiA (pfam06054), PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)

Seq: NNAE01000067.1 Escherichia coli strain WW63 NODE_67_length_23075_cov_21.2523, whole genome shotgun sequence (23075 bp)
Overview 1 RT 1: 16287-20812 bp Neighborhood of RT #1 [16287, 21651] YeeP RVT-GII HTH_17 PLDc_N_DEXD_c DEXDc_RapA SF2_C_SNF Feature: gene Location: 16287-17162 bp Feature: domain Description: YeeP Location: 16302-17160 bp Feature: domain Description: YeeP Location: 16302 -17160 bp Feature: gene Location: 17388-17630 bp Feature: gene Location: 17620-17902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17629-17716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1762 9-17716 bp Feature: gene Location: 18191-18370 bp Feature: domain Description: HTH_17 Location: 18209-18353 bp Feature: domain Description: HTH_17 Location: 182 09-18353 bp Feature: gene Location: 18385-21651 bp Feature: domain Description: PLDc_N_DEXD_c Location: 18400-18811 bp Feature: domain Description: PLDc_N_DEXD_c Location: 18400-18811 bp Feature: domain Description: DEXDc_RapA Location: 19072-19639 bp Feature: domain Description: DEXDc_RapA Location: 19072 -19639 bp Feature: domain Description: SF2_C_SNF Location: 20218-20812 bp Feature: domain Description: SF2 _C_SNF Location: 2 02 18-2 0812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-GII, HTH_17 (pfam12728), PLDc_N_DEXD_c (cd10311), DEXDc_RapA (cd18011), SF2_C_SNF (cd18793)

Seq: NNAE01000159.1 Escherichia coli strain WW63 NODE_159_length_2273_cov_97.3354, whole genome shotgun sequence (2273 bp)
Overview 1 RT 1: 1-1936 bp Neighborhood of RT #1 [1, 2181] RVT-GII GIIM Feature: gene Location: 1-364 bp Feature: gene Location: 279-587 bp Feature: gene Location: 658-2181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 1-1663 bp Feature: domain Description: GIIM Note: maturase Location: 1738-1936 bp Feature: domain Description: GIIM Note: maturase Location: 173 8-193 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NNAE01000129.1 Escherichia coli strain WW63 NODE_129_length_4111_cov_38.8111, whole genome shotgun sequence (4111 bp)
Overview 1 RT 1: 563-3425 bp Neighborhood of RT #1 [563, 3463] RVT-GII InsA Rep_3 Feature: gene Location: 563-814 bp Feature: gene Location: 814-1041 bp Feature: gene Location: 1026-2297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1215-1905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1215-1905 bp Feature: gene Location: 2448-3145 bp Feature: domain Description: InsA Location: 2454-2721 bp Feature: domain Description: InsA Location: 24 54 -2721 bp Feature: gene Location: 3155-3463 bp Feature: domain Description: Rep_3 Location: 3161-3425 bp Feature: domain Description: Rep_3 Location: 3161-34 25 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsA (COG3677), Rep_3 (pfam01051)