myRT

myRT report for GCA_002263865.1_ASM226386v1

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Seq: NNAF01000169.1 Escherichia coli strain WW601 NODE_169_length_2272_cov_110.377, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1936 bp Neighborhood of RT #1 [1, 2181] RVT-GII GIIM Feature: gene Location: 1-364 bp Feature: gene Location: 279-587 bp Feature: gene Location: 658-2181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931 -1 663 bp Feature: domain Description: GIIM Note: maturase Location: 1738-1936 bp Feature: domain Description: GIIM Note: maturase Location: 1 738-1 936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NNAF01000049.1 Escherichia coli strain WW601 NODE_49_length_35065_cov_29.4624, whole genome shotgun sequence (35065 bp)
Overview 1 RT 1: 16308-20833 bp Neighborhood of RT #1 [16308, 21672] YeeP RVT-GII HTH_17 PLDc_N_DEXD_c DEXDc_RapA SF2_C_SNF Feature: gene Location: 16308-17183 bp Feature: domain Description: YeeP Location: 16323-17181 bp Feature: domain Description: YeeP Location: 1632 3-17181 bp Feature: gene Location: 17409-17651 bp Feature: gene Location: 17641-17923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17650-17737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17650-17737 bp Feature: gene Location: 18212-18391 bp Feature: domain Description: HTH_17 Location: 18230-18374 bp Feature: domain Description: HTH_17 Location: 182 30-18374 bp Feature: gene Location: 18406-21672 bp Feature: domain Description: PLDc_N_DEXD_c Location: 18421-18832 bp Feature: domain Description: PLDc_N_DEXD_c Location: 1842 1-18832 bp Feature: domain Description: DEXDc_RapA Location: 19093-19660 bp Feature: domain Description: DEXDc_RapA Location: 19093-19660 bp Feature: domain Description: SF2_C_SNF Location: 20239-20833 bp Feature: domain Description: SF2 _C_SNF Location: 2 02 39-2 0833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-GII, HTH_17 (pfam12728), PLDc_N_DEXD_c (cd10311), DEXDc_RapA (cd18011), SF2_C_SNF (cd18793)

Seq: NNAF01000052.1 Escherichia coli strain WW601 NODE_52_length_33818_cov_21.8675, whole genome shotgun sequence (33818 bp)
Overview 1 RT 1: 27865-32935 bp Neighborhood of RT #1 [27865, 32935] CoiA PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 27865-28866 bp Feature: domain Description: CoiA Location: 27946-28084 bp Feature: domain Description: CoiA Location: 27946-28084 bp Feature: gene Location: 29676-31178 bp Feature: domain Description: PRK13889 Location: 29679-30261 bp Feature: domain Description: PRK13 889 Location: 29679-3 0261 bp Feature: gene Location: 31255-32355 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31396-31948 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 13 96-3 1948 bp Feature: gene Location: 32348-32629 bp Feature: domain Description: HTH_XRE Location: 32363-32528 bp Feature: domain Description: HTH_XRE Location: 3 23 63 -3 2528 bp Feature: gene Location: 32720-32935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CoiA (pfam06054), PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)

Seq: NNAF01000151.1 Escherichia coli strain WW601 NODE_151_length_2971_cov_27.6595, whole genome shotgun sequence (2971 bp)
Overview 1 RT 1: 81-2722 bp Neighborhood of RT #1 [81, 2971] PRK10276 RVT-GII InsA Feature: gene Location: 81-410 bp Feature: domain Description: PRK10276 Location: 84-405 bp Feature: domain Description: PRK10276 Location: 84 -4 05 bp Feature: gene Location: 563-814 bp Feature: gene Location: 814-2298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1216-1906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1216-1906 bp Feature: gene Location: 2449-2971 bp Feature: domain Description: InsA Location: 2455-2722 bp Feature: domain Description: InsA Location: 24 55-2722 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsA (COG3677), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII