myRT

myRT report for GCA_002263885.1_ASM226388v1

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Seq: NNAG01000104.1 Escherichia coli strain WW546 NODE_104_length_9097_cov_23.2204, whole genome shotgun sequence (9097 bp)
Overview 1 RT 1: 884-5172 bp Neighborhood of RT #1 [884, 5954] HTH_XRE RVT-Retrons PRK13889 CoiA Feature: gene Location: 884-1099 bp Feature: gene Location: 1190-1471 bp Feature: domain Description: HTH_XRE Location: 1205-1370 bp Feature: domain Description: HTH_XRE Location: 1 205-1 370 bp Feature: gene Location: 1464-2564 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1605-2157 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 605-21 57 bp Feature: gene Location: 2641-4143 bp Feature: domain Description: PRK13889 Location: 2644-3226 bp Feature: domain Description: PRK1 3889 Location: 2644-3226 bp Feature: gene Location: 4953-5954 bp Feature: domain Description: CoiA Location: 5034-5172 bp Feature: domain Description: CoiA Location: 5034-51 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional), CoiA (pfam06054)

Seq: NNAG01000138.1 Escherichia coli strain WW546 NODE_138_length_4112_cov_47.8977, whole genome shotgun sequence (4112 bp)
Overview 1 RT 1: 81-3426 bp Neighborhood of RT #1 [81, 3464] PRK10276 RVT-GII InsA Rep_3 Feature: gene Location: 81-410 bp Feature: domain Description: PRK10276 Location: 84-405 bp Feature: domain Description: PRK102 76 Location: 84-405 bp Feature: gene Location: 563-814 bp Feature: gene Location: 814-2298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1216-1906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 16-1906 bp Feature: gene Location: 2449-3146 bp Feature: domain Description: InsA Location: 2455-2722 bp Feature: domain Description: InsA Location: 2 455-2 72 2 bp Feature: gene Location: 3156-3464 bp Feature: domain Description: Rep_3 Location: 3162-3426 bp Feature: domain Description: Rep_3 Location: 3162 -342 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsA (COG3677), Rep_3 (pfam01051), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: NNAG01000049.1 Escherichia coli strain WW546 NODE_49_length_35064_cov_30.5617, whole genome shotgun sequence (35064 bp)
Overview 1 RT 1: 16308-20833 bp Neighborhood of RT #1 [16308, 21672] YeeP RVT-GII HTH_17 PLDc_N_DEXD_c DEXDc_RapA SF2_C_SNF Feature: gene Location: 16308-17183 bp Feature: domain Description: YeeP Location: 16323-17181 bp Feature: domain Description: YeeP Location: 163 23 -17181 bp Feature: gene Location: 17409-17651 bp Feature: gene Location: 17641-17923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17650-17737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17650-1773 7 bp Feature: gene Location: 18212-18391 bp Feature: domain Description: HTH_17 Location: 18230-18374 bp Feature: domain Description: HTH_17 Location: 1823 0-183 74 bp Feature: gene Location: 18406-21672 bp Feature: domain Description: PLDc_N_DEXD_c Location: 18421-18832 bp Feature: domain Description: PLDc_N_DEXD_c Location: 18421-1883 2 bp Feature: domain Description: DEXDc_RapA Location: 19093-19660 bp Feature: domain Description: DEXDc_RapA Location: 19093 -19660 bp Feature: domain Description: SF2_C_SNF Location: 20239-20833 bp Feature: domain Description: SF2_C_SNF Location: 2023 9-2083 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-GII, HTH_17 (pfam12728), PLDc_N_DEXD_c (cd10311), DEXDc_RapA (cd18011), SF2_C_SNF (cd18793)

Seq: NNAG01000170.1 Escherichia coli strain WW546 NODE_170_length_2272_cov_114.553, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1936 bp Neighborhood of RT #1 [1, 2181] RVT-GII GIIM Feature: gene Location: 1-364 bp Feature: gene Location: 279-587 bp Feature: gene Location: 658-2181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1663 bp Feature: domain Description: GIIM Note: maturase Location: 1738-1936 bp Feature: domain Description: GIIM Note: maturase Location: 1738-1936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)