myRT

myRT report for GCA_002263895.1_ASM226389v1

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Seq: NNAH01000052.1 Escherichia coli strain WW50 NODE_52_length_35063_cov_26.6449, whole genome shotgun sequence (35063 bp)
Overview 1 RT 1: 16306-20831 bp Neighborhood of RT #1 [16306, 21670] YeeP RVT-GII HTH_17 PLDc_N_DEXD_c DEXDc_RapA SF2_C_SNF Feature: gene Location: 16306-17181 bp Feature: domain Description: YeeP Location: 16321-17179 bp Feature: domain Description: YeeP Location: 1 6321 -1 71 79 bp Feature: gene Location: 17407-17649 bp Feature: gene Location: 17639-17921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17648-17735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7648-1 7735 bp Feature: gene Location: 18210-18389 bp Feature: domain Description: HTH_17 Location: 18228-18372 bp Feature: domain Description: HTH_1 7 Location: 1 8228-1 8372 bp Feature: gene Location: 18404-21670 bp Feature: domain Description: PLDc_N_DEXD_c Location: 18419-18830 bp Feature: domain Description: PLDc_N_DEXD_c Location: 1 841 9-1 8830 bp Feature: domain Description: DEXDc_RapA Location: 19091-19658 bp Feature: domain Description: DEXDc_RapA Location: 1 9091 -1 9658 bp Feature: domain Description: SF2_C_SNF Location: 20237-20831 bp Feature: domain Description: SF2_C_SNF Location: 20237-20831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-GII, HTH_17 (pfam12728), PLDc_N_DEXD_c (cd10311), DEXDc_RapA (cd18011), SF2_C_SNF (cd18793)

Seq: NNAH01000125.1 Escherichia coli strain WW50 NODE_125_length_4111_cov_37.3826, whole genome shotgun sequence (4111 bp)
Overview 1 RT 1: 563-3425 bp Neighborhood of RT #1 [563, 3463] RVT-GII InsA Rep_3 Feature: gene Location: 563-814 bp Feature: gene Location: 814-1041 bp Feature: gene Location: 1026-2297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1215-1905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 15-1905 bp Feature: gene Location: 2448-3145 bp Feature: domain Description: InsA Location: 2454-2721 bp Feature: domain Description: InsA Location: 2 454-2 72 1 bp Feature: gene Location: 3155-3463 bp Feature: domain Description: Rep_3 Location: 3161-3425 bp Feature: domain Description: Rep_3 Location: 3161-342 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsA (COG3677), Rep_3 (pfam01051)

Seq: NNAH01000158.1 Escherichia coli strain WW50 NODE_158_length_2272_cov_98.3505, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1936 bp Neighborhood of RT #1 [1, 2181] RVT-GII GIIM Feature: gene Location: 1-364 bp Feature: gene Location: 279-587 bp Feature: gene Location: 658-2181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 1-1663 bp Feature: domain Description: GIIM Note: maturase Location: 1738-1936 bp Feature: domain Description: GIIM Note: maturase Location: 173 8-193 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)